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[173733_s_at]

Description CEK009G8F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F40F9.6A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D37760 /WB_GENE_ID=F40F9.6A /WP=CE05855 /CHR=5 /FEA=Genomic Cluster /DEF=glycosyl hydrolase; C.elegans cDNA clone yk9g8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 28      4grp_high_8_8 > 07      6grp_highest_nonorm > 85      6grp_total > 39      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 493
1 2 3 4 range
A 871.9
(1.7)
P 		581.9
(-3)
P 		898.4
(2.2)
P 		950.2
(3)
P 		368
B 787.4
(-1)
P 		640
(-3)
P 		866.3
(0.1)
P 		1075.1
(3)
P 		435
C 766
(-1.2)
P 		649.1
(-3)
P 		1043.5
(3)
P 		893
(0.7)
P 		394
avr 808.4
(0.2) 		623.7
(-3) 		936.1
(2.4) 		972.8
(3) 		349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 795.8
(0.8)
P 		896.2
(3)
P 		659.5
(-2.1)
P 		616.4
(-3)
P 		823.1
(1.4)
P 		788.8
(0.7)
P 		280
B 833.4
(0.9)
P 		761.7
(-1.7)
P 		740.8
(-2.5)
P 		725.9
(-3)
P 		792.1
(-0.6)
P 		891.7
(3)
P 		166
C 838.4
(2.8)
P 		750.5
(0.9)
P 		734.8
(0.6)
P 		566.5
(-3)
P 		835.3
(2.7)
P 		849.3
(3)
P 		283
avr 822.5
(2.4) 		802.8
(1.8) 		711.7
(-0.8) 		636.3
(-3) 		816.8
(2.2) 		843.3
(3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 317.5
(3)
P 		126.3
(-3)
P 		234.9
(0.4)
P 		139.1
(-2.6)
P 		191
B 251.1
(3)
P 		158.1
(-3)
P 		200.7
(-0.3)
P 		229.1
(1.6)
P 		93
C 253.6
(-0.1)
P 		186.6
(-2)
P 		363.7
(3)
P 		150.6
(-3)
P 		213
avr 274.1
(3) 		157
(-3) 		266.4
(2.6) 		172.9
(-2.2) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 146.7
(-2.9)
P 		318.7
(3)
P 		143.6
(-3)
P 		156.3
(-2.6)
P 		248.4
(0.6)
P 		192.1
(-1.3)
P 		175
B 290
(1.3)
P 		253.5
(-0.1)
P 		179.9
(-3)
P 		192.3
(-2.5)
P 		321.8
(2.6)
P 		332.5
(3)
P 		153
C 310.8
(3)
P 		229
(0.5)
P 		187
(-0.8)
P 		113.9
(-3)
P 		270.3
(1.8)
P 		284.3
(2.2)
P 		197
avr 249.2
(1.5) 		267.1
(2.4) 		170.2
(-2.2) 		154.2
(-3) 		280.2
(3) 		269.6
(2.5) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173733_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25166
Sequence Type Exemplar sequence
Representative Public ID CEK009G8F NCBI
Target Description CEK009G8F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F40F9.6A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D37760 /WB_GENE_ID=F40F9.6A /WP=CE05855 /CHR=5 /FEA=Genomic Cluster /DEF=glycosyl hydrolase; C.elegans cDNA clone yk9g8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073107 NCBI Caenorhabditis elegans F40F9.6b (F40F9.6) mRNA, complete cds. 11/11 None
F40F9.6b.2 ENSEMBL cdna:known chromosome:CEL140:V:9728450:9732092:-1 gene:F40F9.6 11/11 A 
F40F9.6b.1 ENSEMBL cdna:known chromosome:CEL140:V:9728529:9732092:-1 gene:F40F9.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179364 2 1 NM_073107 173733_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9728592-9732091(-) 99.87 100.0
Public Domain and Genome References
Ensembl F40F9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54240 Hypothetical protein F40F9.6b [Caenorhabditis elegans] ref|NP_505508.1| F40F9.6b [Caenorhabditis elegans] 0.0
blast CAA94764 Hypothetical protein F40F9.6a [Caenorhabditis elegans] ref|NP_505507.1| F40F9.6a [Caenorhabditis elegans] 0.0
blast CAE72241 Hypothetical protein CBG19359 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000322 EMBL-EBI Glycoside hydrolase, family 31 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173733_S_AT
tatgtatttatctgaacgtcaattgtacttttttctccaacagttggggtttctttattg
ctttactatccatccccatgttcttgtccgtttttttctctagttgtgtatttccccacc
ctcttccgggatctgaatgttttagaacatcgccatttttcttgtgattgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTATTTATCTGAACGTCAATTG 59 655 2845 Antisense
TGAACGTCAATTGTACTTTTTTCTC 28 571 2857 Antisense
TGTACTTTTTTCTCCAACAGTTGGG 414 543 2868 Antisense
CAACAGTTGGGGTTTCTTTATTGCT 39 181 2882 Antisense
TCTTTATTGCTTTACTATCCATCCC 46 617 2896 Antisense
TCCGTTTTTTTCTCTAGTTGTGTAT 363 265 2931 Antisense
TTCTCTAGTTGTGTATTTCCCCACC 386 691 2940 Antisense
CACCCTCTTCCGGGATCTGAATGTT 58 201 2961 Antisense
GATCTGAATGTTTTAGAACATCGCC 336 419 2974 Antisense
GAACATCGCCATTTTTCTTGTGATT 326 351 2989 Antisense
ATCGCCATTTTTCTTGTGATTGTTT 44 39 2993 Antisense
Sequence Source Affymetrix Proprietary Database