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[173732_s_at] DNA repair protein like

Description CEK002CZR /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M18.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27411 /WB_GENE_ID=M18.5 /WP=CE23880 /CHR=4 /FEA=Genomic Cluster /DEF=DNA repair protein like; C.elegans cDNA clone yk2c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 58      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 84      6grp_total > 47      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 512
1 2 3 4 range
A 718.7
(3)
P 		474.2
(-2.3)
P 		443.9
(-3)
P 		660.3
(1.7)
P 		275
B 686.5
(1.8)
P 		280.7
(-3)
P 		490.9
(-0.5)
P 		793.1
(3)
P 		512
C 587.7
(0)
P 		418.5
(-3)
P 		581.7
(-0.1)
P 		754.3
(3)
P 		336
avr 664.3
(1.8) 		391.1
(-3) 		505.5
(-1) 		735.9
(3) 		345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 514
1 2 3 4 5 6 range
A 524.6
(0.3)
P 		567.7
(1)
P 		306
(-3)
P 		618.4
(1.8)
P 		331.7
(-2.6)
P 		699.5
(3)
P 		394
B 522.7
(-0.8)
P 		616.7
(0.4)
P 		497.1
(-1.1)
P 		348.2
(-3)
P 		532.8
(-0.7)
P 		820.2
(3)
P 		472
C 726.9
(3)
P 		580.3
(0.6)
P 		622.9
(1.3)
P 		365.3
(-3)
P 		577.1
(0.5)
P 		712.1
(2.8)
P 		362
avr 591.4
(-0.1) 		588.2
(-0.1) 		475.3
(-2.4) 		444
(-3) 		480.5
(-2.3) 		743.9
(3) 		300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 261.7
(3)
P 		102.9
(-2.8)
P 		116
(-2.3)
P 		96.7
(-3)
P 		165
B 218.9
(3)
P 		69.3
(-3)
P 		113.8
(-1.2)
P 		169
(1)
P 		150
C 194.6
(2.4)
P 		120.3
(-3)
P 		202.7
(3)
P 		127.2
(-2.5)
P 		82
avr 225.1
(3) 		97.5
(-3) 		144.2
(-0.8) 		131
(-1.4) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 96.7
(-1.7)
P 		201.9
(3)
P 		66.6
(-3)
P 		156.8
(1)
P 		100.1
(-1.5)
P 		170.3
(1.6)
P 		135
B 181.9
(-0.5)
P 		205.3
(0.2)
P 		120.7
(-2.2)
P 		92.2
(-3)
P 		216.5
(0.5)
P 		305.9
(3)
P 		214
C 269.4
(3)
P 		177.1
(0.2)
P 		158.5
(-0.4)
P 		73.5
(-3)
P 		186.7
(0.5)
P 		238.4
(2.1)
P 		196
avr 182.7
(0.5) 		194.8
(1) 		115.3
(-2.6) 		107.5
(-3) 		167.8
(-0.2) 		238.2
(3) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173732_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24462
Sequence Type Exemplar sequence
Representative Public ID CEK002CZR NCBI
Target Description CEK002CZR /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M18.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27411 /WB_GENE_ID=M18.5 /WP=CE23880 /CHR=4 /FEA=Genomic Cluster /DEF=DNA repair protein like; C.elegans cDNA clone yk2c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069898 NCBI Caenorhabditis elegans M18.5 (M18.5) mRNA, complete cds. 11/11 None
SNAP00000023284 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12115171:12121093:-1 11/11 None
GENEFINDER00000023292 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12115171:12121093:-1 11/11 None
M18.5 ENSEMBL cdna:known chromosome:CEL140:IV:12114790:12121134:-1 gene:M18.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12115177-12121100(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNA repair protein like
Ensembl M18.5
Entrez Gene 178156 Entrez gene
SwissProt Q21554 EMBL-EBI
WormBase CE23880 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92824 Hypothetical protein M18.5 [Caenorhabditis elegans] ref|NP_502299.1| M18.5 [Caenorhabditis elegans] 0.0
blast CAE62185 Hypothetical protein CBG06232 [Caenorhabditis briggsae] 0.0
blast XP_533275 PREDICTED: similar to DNA damage binding protein 1 (Damage-specific DNA binding protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E complementing protein) (XPCe) (X-associated protein 1) (XAP-1)... [Canis familiaris] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004871 EMBL-EBI CPSF A subunit, C-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173732_S_AT
ctctcttctctcgtacagaatgctggaaggaaattttgaggaagttgctaaagattggaa
tagtcaatggatggttacttgcgagttcatcacagctgaatcaatccttggaggagaagc
tcatctgaatctgttcactgtagaagttgataaaacccgtccgattactgatgatggtcg
atatgtgttggaaccaactggatattggtatctcggagagcttccaaaagtcatgacaag
atcgactcttgtcattcaaccagaagatagtattatccagtacagtcaaccaatcatgtt
tggaacaaatcagggaacaattggaatgattgtgcagattgatgacaaatggaaaaagtt
tttgattgcaattgaaaaggctatcgcagattccgttaaaaactgcatgcacattgaaca
ttccagttacagaacttttgtgttccagaaaagagcggaaccgccatccggattcgtcga
tggagatctcgttgaatcgattctcgacatggatcgttctgttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCTTCTCTCGTACAGAATGCTG 212 231 2788 Antisense
GTTACTTGCGAGTTCATCACAGCTG 117 447 2861 Antisense
ATCACAGCTGAATCAATCCTTGGAG 242 27 2876 Antisense
GAGAAGCTCATCTGAATCTGTTCAC 52 393 2901 Antisense
AAAACCCGTCCGATTACTGATGATG 693 125 2939 Antisense
ATCGACTCTTGTCATTCAACCAGAA 57 37 3028 Antisense
TATCCAGTACAGTCAACCAATCATG 620 657 3061 Antisense
GAAAAGGCTATCGCAGATTCCGTTA 72 355 3161 Antisense
AAAGAGCGGAACCGCCATCCGGATT 392 121 3237 Antisense
GGATTCGTCGATGGAGATCTCGTTG 32 509 3257 Antisense
TCTCGACATGGATCGTTCTGTTGCA 184 611 3289 Antisense
Sequence Source Affymetrix Proprietary Database