[Home] | [Total List]

[173731_s_at]

Description AV183471_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M05D6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV183471 /WB_GENE_ID=M05D6.5 /WP=CE03503 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk652a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 97      6grp_total > 66      4grp_total > 25      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2511
1 2 3 4 range
A 1208
(-3)
P 		2262.2
(-0.4)
P 		2182.2
(-0.6)
P 		3603
(3)
P 		2395
B 1328.9
(-3)
P 		2001.9
(-0.9)
P 		1582.7
(-2.2)
P 		3227.5
(3)
P 		1899
C 1092.2
(-3)
P 		2287.8
(0.2)
P 		2072.7
(-0.4)
P 		3365.1
(3)
P 		2273
avr 1209.7
(-3) 		2184
(-0.3) 		1945.9
(-1) 		3398.5
(3) 		2189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 878
1 2 3 4 5 6 range
A 1000.2
(-1.7)
P 		854.1
(-2.9)
P 		954.3
(-2.1)
P 		1191.4
(-0.3)
P 		835.2
(-3)
P 		1618.5
(3)
P 		783
B 875.6
(-1.7)
P 		741
(-3)
P 		904.1
(-1.4)
P 		911.1
(-1.4)
P 		842.4
(-2)
P 		1359.7
(3)
P 		619
C 912.7
(-1.7)
P 		750.2
(-3)
P 		1292.7
(1.4)
P 		974.1
(-1.2)
P 		847
(-2.2)
P 		1494.1
(3)
P 		744
avr 929.5
(-1.8) 		781.8
(-3) 		1050.4
(-0.7) 		1025.5
(-0.9) 		841.5
(-2.5) 		1490.8
(3) 		709
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 439.8
(-3)
P 		491.1
(-0.6)
P 		570.5
(3)
P 		527.4
(1)
P 		131
B 423.8
(-1.9)
P 		494.4
(-0.6)
P 		366.8
(-3)
P 		687.8
(3)
P 		321
C 361.5
(-3)
P 		657.8
(1.9)
P 		722.4
(3)
P 		567.4
(0.4)
P 		361
avr 408.4
(-3) 		547.8
(1.5) 		553.2
(1.7) 		594.2
(3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 184.4
(-3)
P 		303.7
(0.4)
P 		207.8
(-2.3)
P 		302.2
(0.4)
P 		252
(-1.1)
P 		394.1
(3)
P 		210
B 304.7
(-1.2)
P 		246.7
(-2.4)
P 		219.6
(-3)
P 		241.3
(-2.5)
P 		342.3
(-0.4)
P 		507
(3)
P 		287
C 338.3
(-0.2)
P 		228.9
(-2.3)
P 		329
(-0.4)
P 		195.9
(-3)
P 		274.1
(-1.5)
P 		500.2
(3)
P 		304
avr 275.8
(-2.2) 		259.8
(-2.6) 		252.1
(-2.8) 		246.5
(-3) 		289.5
(-1.8) 		467.1
(3) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173731_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23395
Sequence Type Exemplar sequence
Representative Public ID AV183471 NCBI
Target Description AV183471_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M05D6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV183471 /WB_GENE_ID=M05D6.5 /WP=CE03503 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk652a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063390 NCBI Caenorhabditis elegans M05D6.5 (M05D6.5) mRNA, complete cds. 11/11 None
SNAP00000015530 ENSEMBL cdna:SNAP chromosome:CEL140:II:8480681:8482116:-1 11/11 None
GENEFINDER00000015540 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8480681:8482116:-1 11/11 None
M05D6.5.1 ENSEMBL cdna:known chromosome:CEL140:II:8480420:8482138:-1 gene:M05D6.5 11/11 None
M05D6.5.2 ENSEMBL cdna:known chromosome:CEL140:II:8480435:8482140:-1 gene:M05D6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8480474-8482114(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M05D6.5
Entrez Gene 174357 Entrez gene
SwissProt Q21524 EMBL-EBI
WormBase CE03503 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91414 Hypothetical protein M05D6.5 [Caenorhabditis elegans] ref|NP_495791.1| M05D6.5 [Caenorhabditis elegans] 8.0E-70
blast CAE57632 Hypothetical protein CBG00617 [Caenorhabditis briggsae] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR007667 EMBL-EBI Hypoxia induced protein conserved region 6.9E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495791.1 2 71-93,113-135
M05D6.5.1 2 71-93,113-135
M05D6.5.2 2 71-93,113-135
SNAP00000015530 2 71-93,113-135
GENEFINDER00000015540 2 71-93,113-135
Sequence
Target Sequence 
>C. ELEGANS:173731_S_AT
cgtacagctttcatgaacgtcgccggagtccacgaggagccgaagaaaggatcttacgaa
tggaaaaaagaacatatgacaccacaacaactcgcaagaactatggataatgccgagaaa
tacaatgggatccctgcaattccagtcgacattggataccacagcggaaagaacacaggc
ggtgcacagaagactggagtggtctcaaatgctgcgagcaatccaggagtcattcttgga
atgggactgacaactgccgcccttttgggaatgttcagatcctcatttcttggtgacaaa
gtcggagctcaaaaaatgatgcagtaccgtattatggcccaatttttcactgtcaccgct
cttgtcgccggagtgaccattttcggtgccacgtatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTACAGCTTTCATGAACGTCGCCG 368 245 26 Antisense
CCGGAGTCCACGAGGAGCCGAAGAA 413 259 48 Antisense
TCCCTGCAATTCCAGTCGACATTGG 1 599 156 Antisense
GGAGTGGTCTCAAATGCTGCGAGCA 699 515 221 Antisense
GCTGCGAGCAATCCAGGAGTCATTC 253 297 236 Antisense
GGAATGGGACTGACAACTGCCGCCC 144 533 263 Antisense
ACTGCCGCCCTTTTGGGAATGTTCA 281 97 278 Antisense
GATGCAGTACCGTATTATGGCCCAA 701 409 343 Antisense
TTATGGCCCAATTTTTCACTGTCAC 531 681 357 Antisense
TTGTCGCCGGAGTGACCATTTTCGG 197 677 387 Antisense
GACCATTTTCGGTGCCACGTATGAA 490 351 400 Antisense
Sequence Source Affymetrix Proprietary Database