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[173729_at]

Description AV203530 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T22F3.11 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203530 /WB_GENE_ID=T22F3.11 /WP=CE18279 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk577g10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_high_8_8 > 01      6grp_highest_nonorm > 54      6grp_total > 72      4grp_total > 15      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 616
1 2 3 4 range
A 670.5
(3)
P 		54.3
(-3)
A 		199
(-1.6)
P 		626.9
(2.6)
P 		616
B 503.3
(2.2)
P 		68
(-3)
P 		157.8
(-1.9)
P 		570.8
(3)
P 		503
C 614.8
(3)
P 		85.4
(-3)
P 		90
(-2.9)
P 		469.2
(1.3)
P 		529
avr 596.2
(3) 		69.2
(-3) 		148.9
(-2.1) 		555.6
(2.5) 		527

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1617
1 2 3 4 5 6 range
A 461
(-2.5)
P 		1510.2
(1.8)
P 		1791.6
(2.9)
P 		1316.9
(1)
P 		1813.8
(3)
P 		347.6
(-3)
P 		1466
B 622.4
(-2.2)
P 		1598.6
(1.8)
P 		1540.6
(1.5)
P 		1365
(0.8)
P 		1904.3
(3)
P 		431.2
(-3)
P 		1473
C 585.7
(-1.9)
P 		1623
(1.9)
P 		1875.8
(2.9)
P 		1239
(0.5)
P 		1914.8
(3)
P 		297.4
(-3)
P 		1617
avr 556.4
(-2.2) 		1577.3
(1.8) 		1736
(2.4) 		1307
(0.7) 		1877.6
(3) 		358.7
(-3) 		1519
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 244.1
(3)
P 		11.8
(-3)
A 		52
(-2)
P 		91.8
(-0.9)
P 		232
B 160.5
(3)
P 		16.8
(-3)
P 		36.6
(-2.2)
P 		121.6
(1.4)
P 		144
C 203.5
(3)
P 		24.6
(-3)
P 		31.4
(-2.8)
P 		79.1
(-1.2)
P 		179
avr 202.7
(3) 		17.7
(-3) 		40
(-2.3) 		97.5
(-0.4) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 689
1 2 3 4 5 6 range
A 85
(-3)
P 		537.1
(2.9)
P 		390.2
(1)
P 		334
(0.2)
P 		547.3
(3)
P 		84.6
(-3)
P 		463
B 216.6
(-2.5)
P 		532.1
(0.6)
P 		374.1
(-0.9)
P 		361.5
(-1)
P 		773.7
(3)
P 		160.8
(-3)
P 		613
C 217.1
(-1.6)
P 		495.2
(1.6)
P 		477.4
(1.4)
P 		249.2
(-1.3)
P 		619.6
(3)
P 		99.6
(-3)
P 		520
avr 172.9
(-2.3) 		521.5
(1.6) 		413.9
(0.4) 		314.9
(-0.7) 		646.9
(3) 		115
(-3) 		532
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25700
Sequence Type Exemplar sequence
Representative Public ID AV203530 NCBI
Target Description AV203530 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T22F3.11 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203530 /WB_GENE_ID=T22F3.11 /WP=CE18279 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk577g10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071614 NCBI Caenorhabditis elegans T22F3.11a (T22F3.11) mRNA, complete cds. 11/11 None
T22F3.11a ENSEMBL cdna:known chromosome:CEL140:V:3611988:3614330:-1 gene:T22F3.11 11/11 None
T22F3.11b ENSEMBL cdna:known chromosome:CEL140:V:3612019:3614366:-1 gene:T22F3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178782 2 1 NM_071614 173729_at (11), 184913_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3612012-3614331(-) 100.0 100.0
Public Domain and Genome References
Ensembl T22F3.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 0.0
blast CAE66803 Hypothetical protein CBG12165 [Caenorhabditis briggsae] 0.0
blast H89006 protein T22F3.11 [imported] - Caenorhabditis elegans 0.0
blast AAO25986 Hypothetical protein T22F3.11b [Caenorhabditis elegans] ref|NP_872136.1| T22F3.11b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504015.1 12 13-35,67-86,93-115,119-141,154-176,186-205,250-272,287-306,319-341,346-368,381-403,413-435
T22F3.11a 12 13-35,67-86,93-115,119-141,154-176,186-205,250-272,287-306,319-341,346-368,381-403,413-435
T22F3.11b 10 13-35,67-86,93-115,119-141,154-176,186-205,250-272,287-306,319-341,346-367
Sequence
Target Sequence 
>C. ELEGANS:173729_AT
gtgtccaaggcgtgaggtgttctatctctgtgatgacctgattgtattgtacctgaaaat
cggagtgtgatcatggtcacatatacaaaaattatgtaaataccccttagcacctttgac
acgttattttgtaaagatttacatataaatatagttcttcccccgttgccctcacgtgta
cactttctcctctctctcctcctcccgctgaaacaaatgcattaaacggttgtacttatg
act

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCCAAGGCGTGAGGTGTTCTAT 251 487 1361 Antisense
GGCGTGAGGTGTTCTATCTCTGTGA 449 541 1369 Antisense
GTGTTCTATCTCTGTGATGACCTGA 677 485 1377 Antisense
GTGATGACCTGATTGTATTGTACCT 24 485 1390 Antisense
GTATTGTACCTGAAAATCGGAGTGT 468 451 1404 Antisense
ATCGGAGTGTGATCATGGTCACATA 322 35 1419 Antisense
TTATGTAAATACCCCTTAGCACCTT 146 679 1452 Antisense
TTTGACACGTTATTTTGTAAAGATT 555 661 1475 Antisense
TATAAATATAGTTCTTCCCCCGTTG 243 659 1504 Antisense
CTCCTCCCGCTGAAACAAATGCATT 561 235 1559 Antisense
GCATTAAACGGTTGTACTTATGACT 604 305 1579 Antisense
Sequence Source Affymetrix Proprietary Database