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[173726_s_at]

Description C36652_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y71G12B.L /5_PRIME_EXT_DB=WormBase Gene ID /GB=C36652 /WB_GENE_ID=Y71G12B.L /WP=CE26256 /CHR=1 /FEA=Genomic Cluster /DEF=(ST.LOUIS); C.elegans cDNA clone yk482g8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 06      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_total > 06      4grp_total > 57      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 148.4
(2.5)
P 		117.3
(-1.1)
P 		153.2
(3)
P 		100.7
(-3)
P 		53
B 150.4
(-1.6)
P 		132.4
(-2.8)
P 		217.7
(3)
P 		130.1
(-3)
P 		88
C 166.2
(-2.4)
P 		266.5
(3)
P 		206.1
(-0.3)
P 		155.8
(-3)
P 		111
avr 155
(-0.5) 		172.1
(1.1) 		192.3
(3) 		128.9
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 176.5
(3)
P 		145.7
(1.1)
P 		81.4
(-3)
P 		97.9
(-2)
P 		102.2
(-1.7)
P 		92
(-2.3)
P 		95
B 108.5
(2.9)
P 		91.5
(1.3)
P 		110.1
(3)
P 		91.7
(1.3)
P 		71.3
(-0.6)
P 		45.6
(-3)
A 		65
C 216
(3)
P 		79.9
(-2)
P 		130.4
(-0.1)
P 		103.2
(-1.1)
P 		88.8
(-1.7)
P 		51.9
(-3)
P 		164
avr 167
(3) 		105.7
(-0.5) 		107.3
(-0.5) 		97.6
(-1) 		87.4
(-1.6) 		63.2
(-3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 54
(3)
P 		25.5
(-1.4)
P 		40
(0.9)
P 		14.7
(-3)
P 		39
B 48
(2.4)
P 		32.7
(-1.7)
P 		50.4
(3)
P 		27.7
(-3)
P 		23
C 55
(0.4)
P 		76.6
(3)
P 		71.8
(2.4)
P 		26.3
(-3)
P 		50
avr 52.3
(2.7) 		44.9
(1.2) 		54.1
(3) 		22.9
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 32.5
(-0.4)
P 		51.8
(3)
P 		17.7
(-3)
P 		24.8
(-1.8)
P 		30.9
(-0.7)
P 		22.4
(-2.2)
P 		34
B 37.7
(3)
P 		30.5
(0.9)
P 		26.7
(-0.2)
P 		24.3
(-0.9)
P 		28.9
(0.4)
P 		17
(-3)
A 		21
C 80
(3)
P 		24.4
(-2.3)
P 		33.2
(-1.5)
P 		20.8
(-2.7)
P 		28.7
(-1.9)
P 		17.4
(-3)
P 		63
avr 50.1
(3) 		35.6
(0.2) 		25.9
(-1.7) 		23.3
(-2.2) 		29.5
(-1) 		18.9
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173726_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22497
Sequence Type Exemplar sequence
Representative Public ID C36652 NCBI
Target Description C36652_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y71G12B.L /5_PRIME_EXT_DB=WormBase Gene ID /GB=C36652 /WB_GENE_ID=Y71G12B.L /WP=CE26256 /CHR=1 /FEA=Genomic Cluster /DEF=(ST.LOUIS); C.elegans cDNA clone yk482g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026650(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026650 NCBI Caenorhabditis elegans Y71G12B.23a (Y71G12B.23) mRNA, complete cds. 10/11 None
SNAP00000001779 ENSEMBL cdna:SNAP chromosome:CEL140:I:1670209:1676431:-1 10/11 None
GENEFINDER00000001823 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1670209:1672710:-1 10/11 None
Y71G12B.23a ENSEMBL cdna:known chromosome:CEL140:I:1670093:1676431:-1 gene:Y71G12B.23 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026651 8/11 Cross Hyb Matching Probes None
Y71G12B.23b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171731 2 1 NM_001026650 173726_s_at (10), 174463_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1670209-1676432(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y71G12B.23
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73924 Hypothetical protein Y71G12B.23a [Caenorhabditis elegans] ref|NP_001021821.1| Y71G12B.23a [Caenorhabditis elegans] 0.0
blast AAT81183 Hypothetical protein Y71G12B.23b [Caenorhabditis elegans] ref|NP_001021822.1| Y71G12B.23b [Caenorhabditis elegans] 0.0
blast CAE74414 Hypothetical protein CBG22146 [Caenorhabditis briggsae] 0.0
blast AAK73924 Hypothetical protein Y71G12B.23a [Caenorhabditis elegans] ref|NP_001021821.1| Y71G12B.23a [Caenorhabditis elegans] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR004254 EMBL-EBI Hly-III related proteins 1.3E-24
Pfam IPR004254 EMBL-EBI Hly-III related proteins 1.3E-24
Pfam IPR004254 EMBL-EBI Hly-III related proteins 1.3E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021821.1 7 380-402,412-434,447-469,484-501,508-527,537-559,561-583
Y71G12B.23a 7 380-402,412-434,447-469,484-501,508-527,537-559,561-583
SNAP00000001779 7 372-394,404-426,439-461,476-493,500-519,529-551,553-575
GENEFINDER00000001823 7 39-61,71-93,106-128,143-160,167-186,196-218,220-242
Sequence
Target Sequence 
>C. ELEGANS:173726_S_AT
cttctactatttcatgtgcgcctacgctcatcgagaccttcagcacattttgatgattat
ctatggtacggaatttttaccactctattgttcacttccagcacggtttaccacttttgc
gagcttctattccgccagcagaatagacaccgaaaacttcgttattacctgcacatttgc
gatcgggcggccatttacctgttcattgcggcctcatacacaccctggctcacacttcgg
taggtgcaagcgcgctctaatggcgggtcactgcggtcttccgggcctaaatctcaaatg
gatgatttgggtatttgcgattcttggaattctctatcaatacaattttcacgaacgcta
caaaactctggaaacaatattatacattctgatcgctgcgggacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTACTATTTCATGTGCGCCTAC 444 219 1201 Antisense
TCATCGAGACCTTCAGCACATTTTG 488 621 1228 Antisense
TTTTACCACTCTATTGTTCACTTCC 235 675 1275 Antisense
TTCCAGCACGGTTTACCACTTTTGC 238 681 1296 Antisense
CCACTTTTGCGAGCTTCTATTCCGC 190 275 1311 Antisense
GAAAACTTCGTTATTACCTGCACAT 521 353 1352 Antisense
TACCTGCACATTTGCGATCGGGCGG 364 649 1366 Antisense
GCCATTTACCTGTTCATTGCGGCCT 52 279 1390 Antisense
CTGGCTCACACTTCGGTAGGTGCAA 134 241 1425 Antisense
GTCTTCCGGGCCTAAATCTCAAATG 210 469 1476 Antisense
TATACATTCTGATCGCTGCGGGACC 289 661 1581 Antisense
Sequence Source Affymetrix Proprietary Database