[Home] | [Total List]

[173724_at] sugar transporter

Description C50715 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C10E2.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C50715 /WB_GENE_ID=C10E2.6 /WP=CE08065 /CHR=X /FEA=Genomic Cluster /DEF=sugar transporter; C.elegans cDNA clone yk524c3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 10      6grp_total > 27      4grp_total > 49      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1125
1 2 3 4 range
A 2241
(-3)
P 		2704.3
(1.1)
P 		2914.5
(3)
P 		2266.9
(-2.8)
P 		674
B 2164.8
(-2.7)
P 		2825.6
(3)
P 		2574.9
(0.8)
P 		2132
(-3)
P 		694
C 1825.1
(-3)
P 		2950.1
(3)
P 		2853.2
(2.5)
P 		2064.1
(-1.7)
P 		1125
avr 2077
(-3) 		2826.7
(3) 		2780.9
(2.6) 		2154.3
(-2.4) 		750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1130
1 2 3 4 5 6 range
A 1760.3
(2.9)
P 		1774.5
(3)
P 		1197.3
(-1)
P 		911
(-3)
P 		1461.7
(0.8)
P 		1379.7
(0.3)
P 		864
B 1909.5
(3)
P 		1809.4
(2.5)
P 		779.4
(-3)
P 		1235.6
(-0.6)
P 		1015.4
(-1.7)
P 		1414.1
(0.4)
P 		1130
C 1651.5
(3)
P 		1606.4
(2.6)
P 		1448.7
(1.2)
P 		979.7
(-3)
P 		1275
(-0.4)
P 		1235.2
(-0.7)
P 		672
avr 1773.8
(3) 		1730.1
(2.6) 		1141.8
(-2.2) 		1042.1
(-3) 		1250.7
(-1.3) 		1343
(-0.5) 		732
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 663
1 2 3 4 range
A 815.9
(3)
P 		587
(0.2)
P 		761.9
(2.3)
P 		331.8
(-3)
P 		484
B 690.4
(2.8)
P 		697.9
(3)
P 		596.7
(0.5)
P 		454.3
(-3)
P 		244
C 604.1
(-0.6)
P 		848.2
(1.6)
P 		994.4
(3)
P 		348
(-3)
P 		646
avr 703.5
(1.8) 		711
(1.9) 		784.3
(3) 		378
(-3) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 324.5
(-1.6)
P 		631.1
(3)
P 		260.7
(-2.6)
P 		231
(-3)
P 		441.1
(0.2)
P 		335.9
(-1.4)
P 		400
B 664.4
(3)
P 		602.3
(2.2)
P 		189.3
(-3)
P 		327.3
(-1.3)
P 		412.6
(-0.2)
P 		527.3
(1.3)
P 		475
C 612.2
(3)
P 		490.2
(1.2)
P 		368.7
(-0.5)
P 		197
(-3)
P 		412.6
(0.1)
P 		413.5
(0.1)
P 		415
avr 533.7
(2.2) 		574.5
(3) 		272.9
(-2.6) 		251.8
(-3) 		422.1
(0.2) 		425.6
(0.2) 		323
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26010
Sequence Type Exemplar sequence
Representative Public ID C50715 NCBI
Target Description C50715 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C10E2.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C50715 /WB_GENE_ID=C10E2.6 /WP=CE08065 /CHR=X /FEA=Genomic Cluster /DEF=sugar transporter; C.elegans cDNA clone yk524c3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078304 NCBI Caenorhabditis elegans C10E2.6 (C10E2.6) mRNA, complete cds. 11/11 None
C10E2.6.1 ENSEMBL cdna:known chromosome:CEL140:X:16767093:16770411:-1 gene:C10E2.6 11/11 None
C10E2.6.2 ENSEMBL cdna:known chromosome:CEL140:X:16767093:16770413:-1 gene:C10E2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16767103-16770409(-) 100.0 100.0
Public Domain and Genome References
Gene Title sugar transporter
Ensembl C10E2.6
Entrez Gene 181724 Entrez gene
SwissProt O17328 EMBL-EBI
WormBase CE29573 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601348_AT similar to solute carrier family 16, member 4 cfa
CANINE:1600585_AT similar to solute carrier family 16, member 4 cfa
CANINE_2:CFA.14399.1.S1_AT similar to solute carrier family 16, member 4 cfa
CANINE_2:CFA.14399.2.S1_AT similar to solute carrier family 16, member 4 cfa
CANINE_2:CFA.14399.2.S1_S_AT similar to solute carrier family 16, member 4 cfa
CANINE_2:CFAAFFX.30267.1.S1_AT similar to solute carrier family 16, member 4 cfa
DROSOPHILA_2:1626727_AT Monocarboxylate transporter 1 dm
DROSGENOME1:144005_AT Monocarboxylate transporter 1 dm
CHICKEN:GGAAFFX.25903.3.S1_S_AT similar to Solute carrier family 16 (monocarboxylic acid transporters), member 4 gga
HG-U133A_2:205234_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U133A:205234_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U133_PLUS_2:205234_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-FOCUS:205234_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HU35KSUBB:RC_H01059_I_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
U133_X3P:G4759113_3P_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95AV2:39260_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95E:68559_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95E:68561_G_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U133_PLUS_2:228455_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U133B:228455_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
U133_X3P:HS.126465.0.A1_3P_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95E:76424_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95D:81350_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
MOE430A:1426082_A_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 mm
MOUSE430_2:1426082_A_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 mm
MOUSE430A_2:1426082_A_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 mm
MG-U74BV2:115451_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 mm
RAE230B:1385164_AT Similar to solute carrier family 16 (monocarboxylic acid transporters), member 4 rn
RAT230_2:1385164_AT Similar to solute carrier family 16 (monocarboxylic acid transporters), member 4 rn
Protein Similarities
Method ID Description E-Value
blast AAB71245 Hypothetical protein C10E2.6 [Caenorhabditis elegans] ref|NP_510705.1| C10E2.6 [Caenorhabditis elegans] 0.0
blast CAE69894 Hypothetical protein CBG16244 [Caenorhabditis briggsae] 0.0
blast NP_495464 T02G5.12 [Caenorhabditis elegans] gb|AAA82406.1| Hypothetical protein T02G5.12 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510705.1 11 20-42,55-77,87-109,116-138,151-173,180-202,391-413,468-490,500-522,527-549,559-581
C10E2.6.1 11 20-42,55-77,87-109,116-138,151-173,180-202,391-413,468-490,500-522,527-549,559-581
C10E2.6.2 11 20-42,55-77,87-109,116-138,151-173,180-202,391-413,468-490,500-522,527-549,559-581
Sequence
Target Sequence 
>C. ELEGANS:173724_AT
gtttgttgttaattctctctcactgttttcccaaataccaataatttgtaattcaataat
ttgaatctggttcaaaactcgtttcacccagttttatctatgtgtgtattagtgcctttt
ttgctcttccagcaatctctcccaaattgatgggcttaacattccgtttttgttttccta
tctttaatatacctcaacacactgtctaaatcgttagactacatttccataatattgctg
gttttgcgcctttctggcacttttcacatctgtattatgatactatgaagttgagttctt
gaaatgatttttcatctggaaattgggaattcagtaaaacgaaacagtttttttaaactc
agtttgaggattaattttactattaatcctcaaactgatcttaaaaactgaagtaccaca
aaagcaaaacgaaaagttctttttttctaaattctacctaaaagtgtctgctttgttacc
ttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTTGTTAATTCTCTCTCACTG 685 451 1799 Antisense
TCTCACTGTTTTCCCAAATACCAAT 510 613 1816 Antisense
GAATCTGGTTCAAAACTCGTTTCAC 428 329 1861 Antisense
CTCGTTTCACCCAGTTTTATCTATG 302 233 1876 Antisense
TATTAGTGCCTTTTTTGCTCTTCCA 508 663 1905 Antisense
TTCCAGCAATCTCTCCCAAATTGAT 140 701 1925 Antisense
GATGGGCTTAACATTCCGTTTTTGT 148 407 1947 Antisense
TTAATATACCTCAACACACTGTCTA 406 683 1982 Antisense
TAATATTGCTGGTTTTGCGCCTTTC 366 635 2028 Antisense
TTTCTGGCACTTTTCACATCTGTAT 438 671 2049 Antisense
AAAGTGTCTGCTTTGTTACCTTCTC 168 121 2259 Antisense
Sequence Source Affymetrix Proprietary Database