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[173722_at]

Description AV193315 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T06D10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV193315 /WB_GENE_ID=T06D10.2 /WP=CE25102 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk615h8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_high_8_8 > 49      6grp_highest_nonorm > 90      6grp_total > 79      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 162.5
(3)
P 		112.9
(-0.9)
P 		142.6
(1.4)
P 		85.7
(-3)
M 		77
B 161.1
(3)
P 		81.7
(-1.3)
P 		84
(-1.1)
P 		49.3
(-3)
P 		112
C 126.3
(3)
P 		90.3
(0.2)
P 		105.1
(1.3)
P 		49.5
(-3)
A 		77
avr 150
(3) 		95
(-0.7) 		110.6
(0.3) 		61.5
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 140.8
(-2.1)
P 		123.6
(-3)
P 		171.1
(-0.6)
P 		125.4
(-2.9)
P 		242.2
(3)
P 		235.8
(2.7)
P 		119
B 122.4
(-1.2)
P 		111.7
(-1.5)
P 		49.7
(-3)
P 		114.3
(-1.4)
P 		143.7
(-0.7)
P 		296.3
(3)
P 		247
C 165.8
(1.6)
P 		113.9
(-2.4)
P 		106.8
(-3)
P 		116.6
(-2.2)
P 		171.3
(2)
P 		184
(3)
P 		77
avr 143
(-1.4) 		116.4
(-2.7) 		109.2
(-3) 		118.8
(-2.6) 		185.7
(0.5) 		238.7
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 59.2
(3)
P 		24.5
(-1.5)
P 		37.3
(0.2)
P 		12.6
(-3)
M 		47
B 51.4
(3)
P 		20.2
(-1.6)
P 		19.5
(-1.7)
P 		10.5
(-3)
P 		41
C 41.8
(3)
P 		26
(0.2)
P 		36.6
(2.1)
P 		8.3
(-3)
A 		34
avr 50.8
(3) 		23.6
(-1) 		31.1
(0.1) 		10.5
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 26
(-3)
P 		44
(-0.7)
P 		37.3
(-1.6)
P 		31.8
(-2.3)
P 		73.1
(3)
P 		57.4
(1)
P 		47
B 42.6
(-1.1)
P 		37.2
(-1.5)
P 		12.1
(-3)
P 		30.3
(-1.9)
P 		58.4
(-0.2)
P 		110.5
(3)
P 		98
C 61.4
(3)
P 		34.8
(-1.2)
P 		27.2
(-2.4)
P 		23.4
(-3)
P 		55.4
(2)
P 		61.6
(3)
P 		38
avr 43.3
(-0.9) 		38.7
(-1.4) 		25.5
(-3) 		28.5
(-2.6) 		62.3
(1.3) 		76.5
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23083
Sequence Type Exemplar sequence
Representative Public ID AV193315 NCBI
Target Description AV193315 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T06D10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV193315 /WB_GENE_ID=T06D10.2 /WP=CE25102 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk615h8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060039 NCBI Caenorhabditis elegans T06D10.2 (T06D10.2) mRNA, complete cds. 11/11 None
T06D10.2.1 ENSEMBL cdna:known chromosome:CEL140:I:9085721:9088147:-1 gene:T06D10.2 11/11 None
T06D10.2.2 ENSEMBL cdna:known chromosome:CEL140:I:9085721:9088148:-1 gene:T06D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9085662-9088067(-) 90.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D10.2
Entrez Gene 172730 Entrez gene
SwissProt Q9U380 EMBL-EBI
WormBase CE25102 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.29117.1.S1_S_AT similar to chromatin assembly factor 1, subunit A (p150) cfa
HG-U133A:214426_X_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A_2:214426_X_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133_PLUS_2:214426_X_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A:203976_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133_PLUS_2:203976_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A_2:203976_S_AT chromatin assembly factor 1, subunit A (p150) hs
HU35KSUBD:RC_H98924_AT chromatin assembly factor 1, subunit A (p150) hs
HUGENEFL:U20979_AT chromatin assembly factor 1, subunit A (p150) hs
U133_X3P:G4885106_3P_A_AT chromatin assembly factor 1, subunit A (p150) hs
U133_X3P:HS.79018.0.S1_3P_A_AT chromatin assembly factor 1, subunit A (p150) hs
HG-FOCUS:203975_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A_2:203975_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133_PLUS_2:203975_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133A:203975_S_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U95AV2:32589_AT chromatin assembly factor 1, subunit A (p150) hs
HG-U133_PLUS_2:229808_AT Chromatin assembly factor 1, subunit A (p150) hs
HG-U133B:229808_AT Chromatin assembly factor 1, subunit A (p150) hs
HG-U95E:87472_AT Chromatin assembly factor 1, subunit A (p150) hs
U133_X3P:HS.79018.1.A1_3P_AT Chromatin assembly factor 1, subunit A (p150) hs
MG-U74AV2:95527_AT chromatin assembly factor 1, subunit A (p150) mm
MU19KSUBA:TC16217_AT Chromatin assembly factor 1, subunit A (p150) (Chaf1a), mRNA mm
MU19KSUBB:TC34407_AT Chromatin assembly factor 1, subunit A (p150) (Chaf1a), mRNA mm
RG-U34B:RC_AI012664_AT similar to chromatin assembly factor-I p150 subunit rn
RAE230A:1373489_AT similar to chromatin assembly factor-I p150 subunit rn
RAT230_2:1373489_AT similar to chromatin assembly factor-I p150 subunit rn
Protein Similarities
Method ID Description E-Value
blast CAB63306 Hypothetical protein T06D10.2 [Caenorhabditis elegans] ref|NP_492440.1| T06D10.2 [Caenorhabditis elegans] 1.0E-130
blast CAE67035 Hypothetical protein CBG12437 [Caenorhabditis briggsae] 5.0E-77
blast XP_789313 PREDICTED: similar to Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin assembly factor I p150 subunit) (CAF-I 150 kDa subunit) (CAF-Ip150) [Strongylocentrotus purpuratus] 4.0E-13
Sequence
Target Sequence 
>C. ELEGANS:173722_AT
gtcaagttctactaatcatttccgaaagctatactagaatcggattgacagttttagtta
ttctactgtctaattttttatttaaaattccaatcctttttaaatatggttttctttctt
tttgactgtgaatgtctcccttgcgtcccgtagtatttatcattttctgttcgtatattc
ccttctcctaaccagaatttcatctaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAGTTCTACTAATCATTTCCGA 59 465 1439 Antisense
ATCATTTCCGAAAGCTATACTAGAA 671 29 1453 Antisense
AAGCTATACTAGAATCGGATTGACA 204 151 1464 Antisense
GGATTGACAGTTTTAGTTATTCTAC 478 497 1480 Antisense
GTTATTCTACTGTCTAATTTTTTAT 445 447 1495 Antisense
TTTGACTGTGAATGTCTCCCTTGCG 451 667 1559 Antisense
CCTTGCGTCCCGTAGTATTTATCAT 500 267 1577 Antisense
GTCCCGTAGTATTTATCATTTTCTG 608 475 1583 Antisense
TCATTTTCTGTTCGTATATTCCCTT 53 621 1598 Antisense
TTCCCTTCTCCTAACCAGAATTTCA 134 697 1616 Antisense
TCTCCTAACCAGAATTTCATCTAAA 155 611 1622 Antisense
Sequence Source Affymetrix Proprietary Database