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[173721_at]

Description AV196124 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y37D8A.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196124 /WB_GENE_ID=Y37D8A.9 /WP=CE20213 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk650b9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 04      4grp_high_8_8 > 29      6grp_highest_nonorm > 89      6grp_total > 87      4grp_total > 34      6grp_highest_sub > In      6grp_cgc > 49      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 781
1 2 3 4 range
A 1351.5
(0.6)
P 		1479.6
(3)
P 		1164.4
(-3)
P 		1188.5
(-2.5)
P 		315
B 699
(-3)
P 		1134.5
(0.5)
P 		1037.6
(-0.3)
P 		1443.5
(3)
P 		745
C 1202.2
(-3)
P 		1351.7
(2.3)
P 		1370
(3)
P 		1223.7
(-2.2)
P 		168
avr 1084.2
(-3) 		1321.9
(3) 		1190.7
(-0.3) 		1285.2
(2.1) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2521
1 2 3 4 5 6 range
A 1421.1
(-1.5)
P 		1009.1
(-3)
P 		1141.8
(-2.5)
P 		1016.7
(-3)
P 		1820.2
(-0)
P 		2638
(3)
P 		1629
B 1221.3
(-1.5)
P 		588.5
(-3)
P 		884.2
(-2.3)
P 		1646.3
(-0.5)
P 		1649
(-0.5)
P 		3109.3
(3)
P 		2521
C 722.2
(-3)
P 		1079.5
(1)
P 		1081.2
(1)
P 		1208.5
(2.4)
P 		1217.8
(2.5)
P 		1258.2
(3)
P 		536
avr 1121.5
(-2) 		892.4
(-3) 		1035.7
(-2.4) 		1290.5
(-1.3) 		1562.3
(-0.2) 		2335.2
(3) 		1443
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 492.1
(3)
P 		321.2
(-0.2)
P 		304.4
(-0.5)
P 		174
(-3)
P 		318
B 222.9
(-3)
P 		280.2
(1.1)
P 		240.4
(-1.8)
P 		307.6
(3)
P 		85
C 398
(1.2)
P 		388.6
(1)
P 		477.5
(3)
P 		206.3
(-3)
P 		271
avr 371
(3) 		330
(1.3) 		340.8
(1.7) 		229.3
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 964
1 2 3 4 5 6 range
A 262
(-2.8)
P 		358.9
(-1.3)
P 		248.7
(-3)
P 		257.8
(-2.9)
P 		549.3
(1.6)
P 		642.3
(3)
P 		394
B 424.9
(-1.6)
P 		195.9
(-3)
P 		214.7
(-2.9)
P 		436
(-1.5)
P 		670
(-0)
P 		1159.4
(3)
P 		964
C 267.7
(-2.2)
P 		329.4
(-0.1)
P 		275.2
(-1.9)
P 		243
(-3)
P 		394
(2.1)
P 		421.2
(3)
P 		178
avr 318.2
(-2.1) 		294.7
(-2.4) 		246.2
(-3) 		312.3
(-2.2) 		537.8
(0.5) 		741
(3) 		495
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173721_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24166
Sequence Type Exemplar sequence
Representative Public ID AV196124 NCBI
Target Description AV196124 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y37D8A.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196124 /WB_GENE_ID=Y37D8A.9 /WP=CE20213 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk650b9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067274 NCBI Caenorhabditis elegans human MRG (Mortality factor-Related Gene) related family member (mrg-1) (mrg-1) mRNA, complete cds. 11/11 None
Y37D8A.9.1 ENSEMBL cdna:known chromosome:CEL140:III:12871011:12874528:-1 gene:Y37D8A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y37D8A.9.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12871017-12874524(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mrg-1
Ensembl Y37D8A.9
Entrez Gene 176702 Entrez gene
SwissProt Q9XWW2 EMBL-EBI
WormBase CE20213 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOE430A:1437802_X_AT similar to mortality factor 4 like 1 mm
MOUSE430A_2:1437802_X_AT similar to mortality factor 4 like 1 mm
MOUSE430_2:1437802_X_AT similar to mortality factor 4 like 1 mm
MG-U74CV2:171106_R_AT similar to mortality factor 4 like 1 mm
MOE430A:1455077_A_AT similar to mortality factor 4 like 1 mm
MOUSE430A_2:1455077_A_AT similar to mortality factor 4 like 1 mm
MOUSE430_2:1455077_A_AT similar to mortality factor 4 like 1 mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21528 Hypothetical protein Y37D8A.9 [Caenorhabditis elegans] ref|NP_499675.1| human MRG (Mortality factor-Related Gene) related family member (mrg-1) [Caenorhabditis elegans] 0.0
blast CAE69556 Hypothetical protein CBG15768 [Caenorhabditis briggsae] 3.0E-67
blast CAE75256 Hypothetical protein CBG23216 [Caenorhabditis briggsae] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR008676 EMBL-EBI MRG 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173721_AT
tcaatagactgatctccttcatcatgtgttccatcccagacgatcttcaatacaccgata
taacttcaataattttatacattgttcattattttccaaagctagccccaccattatgtt
tttgtgaaatcgtggagatccatattttgttcacgttaatctcacgttttctgacgactt
ccacatttcgcattccattatcgttcaattttccgtttagttgtttcccaactattctaa
tgaatatgattctcattttcttttcaatagccccccacattcatatttttccagattctt
cttctcttccaactccccgccatttttagcctatcgagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATAGACTGATCTCCTTCATCAT 39 635 1015 Antisense
TTCCATCCCAGACGATCTTCAATAC 95 701 1043 Antisense
TCATTATTTTCCAAAGCTAGCCCCA 385 619 1100 Antisense
CTAGCCCCACCATTATGTTTTTGTG 387 225 1116 Antisense
AATCTCACGTTTTCTGACGACTTCC 410 169 1172 Antisense
TTCTGACGACTTCCACATTTCGCAT 156 695 1183 Antisense
ATTTCGCATTCCATTATCGTTCAAT 146 17 1199 Antisense
GTTGTTTCCCAACTATTCTAATGAA 407 437 1234 Antisense
TTCTCATTTTCTTTTCAATAGCCCC 238 691 1264 Antisense
CCCCCACATTCATATTTTTCCAGAT 490 261 1286 Antisense
CCCGCCATTTTTAGCCTATCGAGAT 698 259 1330 Antisense
Sequence Source Affymetrix Proprietary Database