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[173720_at]

Description C48383 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y47H9C.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48383 /WB_GENE_ID=Y47H9C.4 /WP=CE20264 /CHR=1 /FEA=Genomic Cluster /DEF=EGF-like domain; C.elegans cDNA clone yk467g8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 50      6grp_total > 39      4grp_total > 22      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 514.6
(3)
P 		193.4
(-3)
P 		311
(-0.8)
P 		388.8
(0.7)
P 		321
B 374.8
(-0.1)
P 		410
(1.5)
P 		310.4
(-3)
P 		442.3
(3)
P 		132
C 361.2
(-3)
P 		448.8
(3)
P 		388.1
(-1.2)
P 		444.3
(2.7)
P 		88
avr 416.9
(2.4) 		350.7
(-2) 		336.5
(-3) 		425.1
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 656
1 2 3 4 5 6 range
A 476.7
(0.7)
P 		487.6
(1)
P 		411.8
(-1.6)
P 		369.5
(-3)
P 		492.7
(1.2)
P 		544.8
(3)
P 		175
B 668.7
(3)
P 		413.5
(-0.4)
P 		223.2
(-3)
P 		476.7
(0.4)
P 		487.5
(0.6)
P 		453.2
(0.1)
P 		446
C 878.9
(3)
P 		412.1
(-1.4)
P 		321
(-2.3)
P 		243.8
(-3)
P 		691
(1.2)
P 		513.9
(-0.4)
P 		635
avr 674.8
(3) 		437.7
(-1) 		318.7
(-3) 		363.3
(-2.2) 		557.1
(1) 		504
(0.1) 		356
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 187.4
(3)
P 		42
(-3)
P 		81.3
(-1.4)
P 		56.9
(-2.4)
P 		145
B 119.5
(3)
P 		101.3
(0.7)
P 		71.9
(-3)
P 		94.3
(-0.2)
P 		48
C 119.6
(1.4)
P 		129
(2.4)
P 		135.3
(3)
P 		74.9
(-3)
P 		60
avr 142.2
(3) 		90.8
(-1.6) 		96.2
(-1.1) 		75.4
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 87.9
(-3)
P 		173.4
(3)
P 		89.7
(-2.9)
P 		93.7
(-2.6)
P 		148.7
(1.3)
P 		132.6
(0.1)
P 		86
B 232.7
(3)
P 		137.6
(-0.2)
P 		54.2
(-3)
P 		126.3
(-0.6)
P 		198
(1.8)
P 		169
(0.9)
P 		179
C 325.8
(3)
P 		125.7
(-1.3)
P 		81.7
(-2.3)
P 		49
(-3)
P 		223.6
(0.8)
P 		172
(-0.3)
P 		277
avr 215.5
(3) 		145.6
(0) 		75.2
(-3) 		89.7
(-2.4) 		190.1
(1.9) 		157.9
(0.5) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22891
Sequence Type Exemplar sequence
Representative Public ID C48383 NCBI
Target Description C48383 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y47H9C.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48383 /WB_GENE_ID=Y47H9C.4 /WP=CE20264 /CHR=1 /FEA=Genomic Cluster /DEF=EGF-like domain; C.elegans cDNA clone yk467g8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170927(11), NM_001026601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170927 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-1) (ced-1) mRNA, complete cds. 11/11 A 
NM_001026601 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-1) (ced-1) mRNA, complete cds. 11/11 None
Y47H9C.4a ENSEMBL cdna:known chromosome:CEL140:I:11859688:11876221:-1 gene:Y47H9C.4 11/11 A 
Y47H9C.4b ENSEMBL cdna:known chromosome:CEL140:I:11859693:11876227:-1 gene:Y47H9C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173064 3 2 NM_001026601 173720_at (11)
NM_170927 173720_at (11), 189327_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11859634-11876153(-) 99.14 100.0
Public Domain and Genome References
Ensembl Y47H9C.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21739 Hypothetical protein Y47H9C.4a [Caenorhabditis elegans] ref|NP_740922.1| CEll Death abnormality family member (ced-1) [Caenorhabditis elegans] gb|AAG60061.1| CED-1 [Caenorhabditis elegans] 0.0
blast CAD27614 Hypothetical protein Y47H9C.4b [Caenorhabditis elegans] ref|NP_001021772.1| CEll Death abnormality family member (ced-1) [Caenorhabditis elegans] 0.0
blast CAD27615 Hypothetical protein Y47H9C.4c [Caenorhabditis elegans] ref|NP_001021773.1| CEll Death abnormality family member (ced-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.2E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740922.1 1 909-931
NP_001021772.1 1 909-931
Y47H9C.4a 1 909-931
Y47H9C.4b 1 909-931
Sequence
Target Sequence 
>C. ELEGANS:173720_AT
gcgtaaacttcaactaacccatcgaagatttttgagatttttttatttttatttttcggc
atttttctcactcaccggtgctaattttcatttcctgtaccattttcgtccttttttcat
gagctccgggagccccgagcccggagcacattttgtgctttatttacggatagtctaact
atatatatatagttgtatttgtatttcatgtactttttactcacttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTAAACTTCAACTAACCCATCGA 591 259 3433 Antisense
AACTAACCCATCGAAGATTTTTGAG 263 137 3444 Antisense
TTATTTTTCGGCATTTTTCTCACTC 383 679 3481 Antisense
TTTCTCACTCACCGGTGCTAATTTT 452 669 3496 Antisense
ACCGGTGCTAATTTTCATTTCCTGT 403 89 3506 Antisense
TTTTCATTTCCTGTACCATTTTCGT 378 675 3517 Antisense
TCCTTTTTTCATGAGCTCCGGGAGC 488 591 3541 Antisense
TTTTCATGAGCTCCGGGAGCCCCGA 151 673 3546 Antisense
CCGAGCCCGGAGCACATTTTGTGCT 687 263 3567 Antisense
TTGTGCTTTATTTACGGATAGTCTA 563 697 3585 Antisense
TTCATGTACTTTTTACTCACTTTTT 290 687 3637 Antisense
Sequence Source Affymetrix Proprietary Database