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[173718_s_at] elastin precusor

Description C48525 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0457.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48525 /WB_GENE_ID=B0457.2 /WP=CE02946 /CHR=2 /FEA=Genomic Cluster /DEF=elastin precusor; C.elegans cDNA clone yk457f12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 52      6grp_total > 32      4grp_total > 38      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 662.1
(3)
P 		535.4
(0.1)
P 		404.1
(-3)
P 		432.5
(-2.3)
P 		258
B 798.2
(3)
P 		536.4
(-0.9)
P 		397.6
(-3)
P 		509
(-1.3)
P 		401
C 664.5
(3)
P 		421.4
(-3)
P 		450.3
(-2.3)
P 		502.9
(-1)
P 		243
avr 708.3
(3) 		497.7
(-1.3) 		417.3
(-3) 		481.5
(-1.7) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 684
1 2 3 4 5 6 range
A 517.6
(-0.3)
P 		672.4
(1.1)
P 		893.2
(3)
P 		649
(0.9)
P 		394.6
(-1.4)
P 		209.5
(-3)
P 		684
B 715.3
(1.8)
P 		661.4
(1.2)
P 		817.1
(3)
P 		571.2
(0.1)
P 		434.9
(-1.5)
P 		308.7
(-3)
P 		508
C 752.5
(3)
P 		696.7
(2.3)
P 		603
(1.2)
P 		711.5
(2.5)
P 		364.4
(-1.7)
P 		259
(-3)
P 		494
avr 661.8
(1.7) 		676.8
(1.9) 		771.1
(3) 		643.9
(1.5) 		398
(-1.4) 		259.1
(-3) 		512
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 241.1
(3)
P 		116.2
(-1.2)
P 		105.6
(-1.6)
P 		63.3
(-3)
P 		178
B 254.5
(3)
P 		132.5
(-1.5)
P 		92.1
(-3)
P 		108.5
(-2.4)
P 		162
C 220
(3)
P 		121.2
(-1.4)
P 		157
(0.2)
P 		84.8
(-3)
P 		135
avr 238.5
(3) 		123.3
(-1.5) 		118.2
(-1.7) 		85.5
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 95.4
(-1.6)
P 		239.2
(3)
P 		194.5
(1.6)
P 		164.6
(0.6)
P 		119.1
(-0.8)
P 		51
(-3)
P 		188
B 248.9
(3)
P 		220.1
(1.7)
P 		198.4
(0.7)
P 		151.3
(-1.4)
P 		176.7
(-0.2)
P 		115.1
(-3)
P 		134
C 278.9
(3)
P 		212.6
(0.9)
P 		153.5
(-0.9)
P 		143.1
(-1.2)
P 		117.9
(-2)
P 		86.7
(-3)
P 		192
avr 207.7
(2.3) 		224
(3) 		182.1
(1.2) 		153
(-0) 		137.9
(-0.7) 		84.3
(-3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173718_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23447
Sequence Type Exemplar sequence
Representative Public ID C48525 NCBI
Target Description C48525 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0457.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48525 /WB_GENE_ID=B0457.2 /WP=CE02946 /CHR=2 /FEA=Genomic Cluster /DEF=elastin precusor; C.elegans cDNA clone yk457f12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063496 NCBI Caenorhabditis elegans B0457.2 (B0457.2) mRNA, complete cds. 11/11 None
SNAP00000022756 ENSEMBL cdna:SNAP chromosome:CEL140:II:8924634:8925436:-1 11/11 None
B0457.2 ENSEMBL cdna:known chromosome:CEL140:II:8924494:8926489:-1 gene:B0457.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8924556-8925226(-) 100.0 100.0
Public Domain and Genome References
Gene Title elastin precusor
Ensembl B0457.2
Entrez Gene 174420 Entrez gene
SwissProt Q17504 EMBL-EBI
WormBase CE32790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91090 Hypothetical protein B0457.2 [Caenorhabditis elegans] emb|CAD59161.1| Hypothetical protein B0457.2 [Caenorhabditis elegans] ref|NP_495897.2| B0457.2 [Caenorhabditis elegans] 1.0E-140
blast CAE59759 Hypothetical protein CBG03211 [Caenorhabditis briggsae] 1.0E-124
blast CAA91090 Hypothetical protein B0457.2 [Caenorhabditis elegans] emb|CAD59161.1| Hypothetical protein B0457.2 [Caenorhabditis elegans] ref|NP_495897.2| B0457.2 [Caenorhabditis elegans] 4.0E-87
blast CAE59759 Hypothetical protein CBG03211 [Caenorhabditis briggsae] 5.0E-80
blast CAB07563 Hypothetical protein C38C6.3 [Caenorhabditis elegans] ref|NP_497041.1| C38C6.3 [Caenorhabditis elegans] 3.0E-13
blast CAB07563 Hypothetical protein C38C6.3 [Caenorhabditis elegans] ref|NP_497041.1| C38C6.3 [Caenorhabditis elegans] 6.0E-13
Sequence
Target Sequence 
>C. ELEGANS:173718_S_AT
tgtgcacccagcaaaccactaagaattgatcttgtcgagttttgcaaggattacgctgca
ttttgcaatgtaccgaatttccatagactaccaggaccacgtatgggacctccattaacc
gataagggtgttggacacgtcgacgtcaatggtcatttcggtttcggagttggagctgtt
cctggtcttgaagttggagtaggatggggtgttgatgttggaccaattcctggaatggga
gaaagtgttggagttggagttggtcttgatttgggaattatgggatctaagacaccagaa
gcattccgtcgtggacaagatgatccaaatgcaaagggaggaggtattgttggaattaat
ggcggagttggagtgaaagcacctggaactggagatggagttggagttggtacaggtctt
ggagtcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCACCCAGCAAACCACTAAGAA 509 553 29 Antisense
AGAATTGATCTTGTCGAGTTTTGCA 18 73 50 Antisense
GTACCGAATTTCCATAGACTACCAG 249 439 98 Antisense
CTACCAGGACCACGTATGGGACCTC 593 223 116 Antisense
ATGGGACCTCCATTAACCGATAAGG 366 49 131 Antisense
AAGGGTGTTGGACACGTCGACGTCA 409 141 152 Antisense
GTCAATGGTCATTTCGGTTTCGGAG 654 463 173 Antisense
TTCGGAGTTGGAGCTGTTCCTGGTC 126 695 191 Antisense
GATGTTGGACCAATTCCTGGAATGG 660 409 242 Antisense
GAAGCATTCCGTCGTGGACAAGATG 61 343 326 Antisense
GAGTTGGTACAGGTCTTGGAGTCGG 240 397 432 Antisense
Sequence Source Affymetrix Proprietary Database