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[173717_s_at]

Description CEK015FXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C26H9A.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32431 /WB_GENE_ID=C26H9A.1 /WP=CE20525 /CHR=4 /FEA=Genomic Cluster /GEN=vha-7 /DEF=C.elegans cDNA clone yk15f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 76      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 74      6grp_total > 56      4grp_total > 61      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 542
1 2 3 4 range
A 799.5
(3)
P 		469.5
(-1)
P 		623
(0.9)
P 		304.1
(-3)
P 		495
B 675.6
(2.9)
P 		617.3
(2.1)
P 		683.1
(3)
P 		257.9
(-3)
P 		425
C 782.3
(3)
P 		578.5
(0.5)
P 		653.1
(1.4)
P 		296.7
(-3)
P 		486
avr 752.5
(3) 		555.1
(0.5) 		653.1
(1.7) 		286.2
(-3) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 628.6
(-1)
P 		608
(-1.9)
P 		642.6
(-0.4)
P 		594.3
(-2.4)
P 		581.1
(-3)
P 		721.7
(3)
P 		141
B 647.2
(-0.5)
P 		678
(0.1)
P 		621.3
(-0.9)
P 		560.4
(-2)
P 		507
(-3)
P 		839.1
(3)
P 		332
C 532.7
(-3)
P 		802.9
(3)
P 		726.6
(1.3)
P 		586
(-1.8)
P 		628.5
(-0.9)
P 		787.9
(2.7)
P 		270
avr 602.8
(-2.1) 		696.3
(0.5) 		663.5
(-0.4) 		580.2
(-2.8) 		572.2
(-3) 		782.9
(3) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 291.1
(3)
P 		101.9
(-1.6)
P 		162.9
(-0.1)
P 		44.5
(-3)
P 		247
B 215.4
(3)
P 		152.5
(0.6)
P 		158.3
(0.9)
P 		55
(-3)
P 		160
C 259
(3)
P 		166.3
(0.3)
P 		227.6
(2.1)
P 		50
(-3)
P 		209
avr 255.2
(3) 		140.2
(-0.4) 		182.9
(0.9) 		49.8
(-3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 115.9
(-3)
P 		216.2
(3)
P 		139.9
(-1.6)
P 		150.7
(-0.9)
P 		175.3
(0.6)
P 		175.7
(0.6)
P 		100
B 225.2
(-0.2)
P 		225.7
(-0.2)
P 		150.9
(-2.9)
P 		148.4
(-3)
P 		206
(-0.9)
P 		312.9
(3)
P 		165
C 197.4
(0.3)
P 		245
(2.2)
P 		184.9
(-0.2)
P 		117.8
(-3)
P 		203.4
(0.5)
P 		263.8
(3)
P 		146
avr 179.5
(-0.8) 		229
(1.8) 		158.6
(-1.9) 		139
(-3) 		194.9
(0) 		250.8
(3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173717_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24789
Sequence Type Exemplar sequence
Representative Public ID CEK015FXR NCBI
Target Description CEK015FXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C26H9A.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32431 /WB_GENE_ID=C26H9A.1 /WP=CE20525 /CHR=4 /FEA=Genomic Cluster /GEN=vha-7 /DEF=C.elegans cDNA clone yk15f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070018(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070018 NCBI Caenorhabditis elegans Vacuolar H ATPase family member (vha-7) (vha-7) mRNA, complete cds. 10/11 None
SNAP00000039135 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12642635:12650403:1 10/11 None
GENEFINDER00000039139 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12640433:12650403:1 11/11 None
C26H9A.1 ENSEMBL cdna:known chromosome:CEL140:IV:12642502:12650623:1 gene:C26H9A.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12640439-12650410(+) 98.57 100.0
Public Domain and Genome References
Gene Title
Gene Symbol vha-7
Ensembl C26H9A.1
Entrez Gene 178219 Entrez gene
SwissProt Q9XTS8 EMBL-EBI
WormBase CE30882 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15992 proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16306 Hypothetical protein C26H9A.1 [Caenorhabditis elegans] ref|NP_502419.2| Vacuolar H ATPase family member (vha-7) [Caenorhabditis elegans] dbj|BAB62293.1| VHA-7 [Caenorhabditis elegans] 0.0
blast CAE59990 Hypothetical protein CBG03483 [Caenorhabditis briggsae] 0.0
blast AAA81682 Vacuolar h atpase protein 5 [Caenorhabditis elegans] ref|NP_501399.1| Vacuolar H ATPase family member (vha-5) [Caenorhabditis elegans] dbj|BAB62291.1| VHA-5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002490 EMBL-EBI V-type ATPase, 116 kDa subunit 1.0E-126
Pfam IPR002490 EMBL-EBI V-type ATPase, 116 kDa subunit 4.2E-47
Pfam IPR002490 EMBL-EBI V-type ATPase, 116 kDa subunit 1.0E-126
Pfam IPR002490 EMBL-EBI V-type ATPase, 116 kDa subunit 6.0E-60
Pfam IPR002490 EMBL-EBI V-type ATPase, 116 kDa subunit 7.5E-77
Pfam IPR002490 EMBL-EBI V-type ATPase, 116 kDa subunit 6.2E-99
Pfam IPR002490 EMBL-EBI V-type ATPase, 116 kDa subunit 2.5E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502419.2 6 469-491,511-533,612-634,647-669,730-752,884-906
C26H9A.1 6 469-491,511-533,612-634,647-669,730-752,884-906
SNAP00000039135 6 538-560,580-602,691-713,726-748,809-831,963-985
GENEFINDER00000039139 7 759-781,801-823,1012-1034,1047-1069,1130-1152,1284-1306,1316-1338
Sequence
Target Sequence 
>C. ELEGANS:173717_S_AT
cccggttgtcgatgcaggaccaccgagatttgaagacgcagaactattactagctgatga
actcgacattggagaagacattcatcattcactatctgacatttttgtgcatcaagcaat
tcacacaattgagttcgtacttggatgtgtatctcatacggcttcatatcttcgtctttg
ggcattatcgttggctcatgcacggctctcggaagtaatgtggcatatggtactcattca
gggaattcatacagtcgatcatattgaaaatgagactattgcgatgtgtttgaagccggt
tgttgcttgtgttggctattttagtgcttcagctattttttttttctgcttaacaagtct
tctttatggaaaaacgtatgaaaaagagaaagcattcttcatattcgcatcgctttccct
ctcaattctgataatgatggaaggtctatctgcattcttgcatgctctacgtcttcattg
ggtcgaattccaatcaaaattctatctgggaacaggacacccattccatgcattttattt
gaaagaaagtctcgaaaatgctcaactaattactgaagaaaccgatcgacttgctgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGGTTGTCGATGCAGGACCACCG 461 257 3095 Antisense
GACATTCATCATTCACTATCTGACA 201 371 3171 Antisense
GGATGTGTATCTCATACGGCTTCAT 288 515 3237 Antisense
ATACGGCTTCATATCTTCGTCTTTG 669 23 3250 Antisense
TGGGCATTATCGTTGGCTCATGCAC 592 553 3273 Antisense
GAAGCCGGTTGTTGCTTGTGTTGGC 170 345 3386 Antisense
CATTCTTCATATTCGCATCGCTTTC 223 217 3487 Antisense
GCTTTCCCTCTCAATTCTGATAATG 489 303 3506 Antisense
GGTCTATCTGCATTCTTGCATGCTC 519 501 3537 Antisense
CTGGGAACAGGACACCCATTCCATG 674 229 3600 Antisense
GAAGAAACCGATCGACTTGCTGACA 522 339 3669 Antisense
Sequence Source Affymetrix Proprietary Database