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[173716_at]

Description AV194511 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y46G5A.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194511 /WB_GENE_ID=Y46G5A.5 /WP=CE21973 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk630c8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 86      6grp_total > 49      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 665
1 2 3 4 range
A 1346.1
(3)
P 		746.6
(-3)
P 		844.1
(-2)
P 		899
(-1.5)
P 		600
B 1411.3
(3)
P 		892.7
(-2)
P 		783.8
(-3)
P 		1048.2
(-0.5)
P 		628
C 1273.1
(3)
P 		877.9
(-3)
P 		893.2
(-2.8)
P 		1067.6
(-0.1)
P 		395
avr 1343.5
(3) 		839.1
(-3) 		840.4
(-3) 		1004.9
(-1) 		504

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 655
1 2 3 4 5 6 range
A 1124.1
(2.1)
P 		795.8
(-1.3)
P 		623.2
(-3)
P 		725.8
(-2)
P 		1143.3
(2.2)
P 		1217.7
(3)
P 		595
B 1078.5
(2.8)
P 		918.9
(0.8)
P 		623.5
(-3)
P 		842.6
(-0.2)
P 		937.8
(1)
P 		1090.7
(3)
P 		467
C 1010
(1.8)
P 		793.3
(-0.5)
P 		759.2
(-0.9)
P 		562.5
(-3)
P 		923.7
(0.9)
P 		1123.5
(3)
P 		561
avr 1070.9
(2.1) 		836
(-0.9) 		668.6
(-3) 		710.3
(-2.5) 		1001.6
(1.2) 		1144
(3) 		475
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 359
1 2 3 4 range
A 490.1
(3)
P 		162.1
(-2.5)
P 		220.7
(-1.5)
P 		131.6
(-3)
P 		359
B 450.1
(3)
P 		220.5
(-2.1)
P 		181.6
(-3)
P 		223.4
(-2.1)
P 		269
C 421.4
(3)
P 		252.4
(-1.2)
P 		311.3
(0.3)
P 		180
(-3)
P 		241
avr 453.9
(3) 		211.7
(-2.3) 		237.9
(-1.7) 		178.3
(-3) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 207.2
(-1)
P 		283
(1.2)
P 		135.7
(-3)
P 		184.1
(-1.6)
P 		345
(3)
P 		296.5
(1.6)
P 		209
B 375.3
(2.3)
P 		305.9
(0.6)
P 		151.4
(-3)
P 		223.2
(-1.3)
P 		381
(2.4)
P 		406.7
(3)
P 		255
C 374.4
(3)
P 		242.1
(-0.1)
P 		193.2
(-1.2)
P 		113.1
(-3)
P 		298.9
(1.2)
P 		376.1
(3)
P 		263
avr 319
(1.8) 		277
(0.5) 		160.1
(-3) 		173.5
(-2.6) 		341.6
(2.5) 		359.8
(3) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23350
Sequence Type Exemplar sequence
Representative Public ID AV194511 NCBI
Target Description AV194511 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y46G5A.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194511 /WB_GENE_ID=Y46G5A.5 /WP=CE21973 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk630c8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064310(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064310 NCBI Caenorhabditis elegans Y46G5A.5 (Y46G5A.5) mRNA, complete cds. 11/11 None
Y46G5A.5 ENSEMBL cdna:known chromosome:CEL140:II:12736945:12738228:-1 gene:Y46G5A.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12736995-12738220(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.5
Entrez Gene 174902 Entrez gene
SwissProt Q9U2G1 EMBL-EBI
WormBase CE21973 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12029_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase, putative / phosphatidylinositol synthase, putative at
ATH1-121501:252953_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase, putative / phosphatidylinositol synthase, putative at
CANINE_2:CFA.17544.1.S1_AT similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) cfa
CANINE_2:CFAAFFX.25962.1.S1_AT similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) cfa
CANINE_2:CFAAFFX.25962.1.S1_S_AT similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) cfa
CANINE_2:CFAAFFX.25964.1.S1_AT similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) cfa
DROSOPHILA_2:1636027_AT dm
DROSOPHILA_2:1627102_AT dm
DROSOPHILA_2:1625595_A_AT dm
DROSGENOME1:145141_AT dm
HU35KSUBA:AA131547_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) hs
HU35KSUBA:RC_AA236173_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) hs
HG-U133A:201253_S_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) hs
HG-U133_PLUS_2:201253_S_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) hs
HG-FOCUS:201253_S_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) hs
HG-U133A_2:201253_S_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) hs
U133_X3P:G5453905_3P_A_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) hs
HG-U95AV2:33397_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) hs
HG-U95C:58821_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) hs
MOE430A:1423657_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) mm
MOUSE430_2:1423657_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) mm
MOUSE430A_2:1423657_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) mm
MU11KSUBA:AA027723_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) mm
MG-U74AV2:97829_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) mm
MOE430A:1436715_S_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) mm
MOUSE430A_2:1436715_S_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) mm
MOUSE430_2:1436715_S_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) mm
MU19KSUBB:TC27420_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) (Cdipt), mRNA mm
MU19KSUBC:TC39348_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) (Cdipt), mRNA mm
RG-U34A:D82928_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) rn
RAE230A:1387900_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) rn
RAT230_2:1387900_AT CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) rn
YEAST_2:1777843_AT Phosphatidylinositol synthase, required for biosynthesis of phosphatidylinositol, which is a precursor for polyphosphoinositides, sphingolipids, and glycolipid anchors for some of the plasma membrane proteins Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8654 phospholipid biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60350 Hypothetical protein Y46G5A.5 [Caenorhabditis elegans] ref|NP_496711.1| Y46G5A.5 [Caenorhabditis elegans] 1.0E-126
blast CAE63561 Hypothetical protein CBG08048 [Caenorhabditis briggsae] 1.0E-114
blast EAA07376 ENSANGP00000014320 [Anopheles gambiae str. PEST] ref|XP_311768.2| ENSANGP00000014320 [Anopheles gambiae str. PEST] 4.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR000462 EMBL-EBI CDP-alcohol phosphatidyltransferase 1.1E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496711.1 4 12-34,38-60,142-164,174-196
Y46G5A.5 4 12-34,38-60,142-164,174-196
Sequence
Target Sequence 
>C. ELEGANS:173716_AT
ctgattccccatgagcttttgtatacacattccccactacttaattcacgagctttacgc
ttagctttagtcctttagtgctctcgtctcaggaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGATTCCCCATGAGCTTTTGTATA 399 239 712 Antisense
ATTCCCCATGAGCTTTTGTATACAC 320 9 715 Antisense
TGAGCTTTTGTATACACATTCCCCA 609 569 723 Antisense
TTCCCCACTACTTAATTCACGAGCT 302 697 741 Antisense
CCCCACTACTTAATTCACGAGCTTT 427 261 743 Antisense
TACTTAATTCACGAGCTTTACGCTT 256 645 749 Antisense
AATTCACGAGCTTTACGCTTAGCTT 297 175 754 Antisense
GAGCTTTACGCTTAGCTTTAGTCCT 171 387 761 Antisense
TACGCTTAGCTTTAGTCCTTTAGTG 415 641 767 Antisense
AGCTTTAGTCCTTTAGTGCTCTCGT 455 77 774 Antisense
TTAGTGCTCTCGTCTCAGGAAAATG 556 679 786 Antisense
Sequence Source Affymetrix Proprietary Database