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[173715_s_at]

Description AV203947 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0511.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203947 /WB_GENE_ID=B0511.12 /WP=CE17351 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk584a6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 55      4grp_high_8_8 > 10      6grp_highest_nonorm > 76      6grp_total > 18      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1022
1 2 3 4 range
A 1375.5
(1.7)
P 		913.3
(-1.3)
P 		646.8
(-3)
P 		1585.7
(3)
P 		939
B 1465.8
(3)
P 		709.7
(-2.5)
P 		635.7
(-3)
P 		1292.9
(1.8)
P 		830
C 1262.9
(0.4)
P 		1131.4
(-0.5)
P 		752.5
(-3)
P 		1657.5
(3)
P 		905
avr 1368.1
(2) 		918.1
(-1.3) 		678.3
(-3) 		1512
(3) 		834

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1080
1 2 3 4 5 6 range
A 1665.5
(3)
P 		863.4
(-3)
P 		985.1
(-2.1)
P 		1109.8
(-1.2)
P 		1165.9
(-0.7)
P 		1292.5
(0.2)
P 		802
B 1198.1
(3)
P 		997.1
(1)
P 		585.8
(-3)
P 		860.7
(-0.3)
P 		788.4
(-1)
P 		1156.1
(2.6)
P 		612
C 1167.7
(0.3)
P 		1089.9
(-0.6)
P 		1388.5
(3)
P 		1205.4
(0.8)
P 		890.9
(-3)
P 		981.7
(-1.9)
P 		498
avr 1343.8
(3) 		983.5
(-2.5) 		986.5
(-2.4) 		1058.6
(-1.3) 		948.4
(-3) 		1143.4
(-0) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 500.8
(3)
P 		198.3
(-2.5)
P 		169.1
(-3)
P 		232.1
(-1.9)
P 		332
B 467.4
(3)
P 		175.3
(-2.5)
P 		147.3
(-3)
P 		275.5
(-0.6)
P 		320
C 418.1
(3)
P 		325.3
(-0.6)
P 		262.3
(-3)
P 		279.5
(-2.3)
P 		156
avr 462.1
(3) 		233
(-2.1) 		192.9
(-3) 		262.4
(-1.5) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 307
(1)
P 		307.1
(1)
P 		214.5
(-3)
P 		281.5
(-0.1)
P 		351.8
(3)
P 		314.7
(1.4)
P 		137
B 416.9
(2.7)
P 		331.9
(0.9)
P 		142.2
(-3)
P 		228
(-1.2)
P 		320.3
(0.7)
P 		431.1
(3)
P 		289
C 432.8
(3)
P 		332.6
(-0.2)
P 		353.4
(0.5)
P 		242.4
(-3)
P 		288.3
(-1.6)
P 		328.6
(-0.3)
P 		190
avr 385.6
(3) 		323.9
(0.5) 		236.7
(-3) 		250.6
(-2.4) 		320.1
(0.4) 		358.1
(1.9) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173715_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22909
Sequence Type Exemplar sequence
Representative Public ID AV203947 NCBI
Target Description AV203947 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0511.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203947 /WB_GENE_ID=B0511.12 /WP=CE17351 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk584a6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060389 NCBI Caenorhabditis elegans B0511.12 (B0511.12) mRNA, complete cds. 11/11 None
SNAP00000031166 ENSEMBL cdna:SNAP chromosome:CEL140:I:10662575:10672630:-1 11/11 None
GENEFINDER00000031173 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10662575:10674998:-1 11/11 None
B0511.12 ENSEMBL cdna:known chromosome:CEL140:I:10662430:10669723:-1 gene:B0511.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10662378-10674930(-) 99.7 100.0
Public Domain and Genome References
Gene Title
Ensembl B0511.12
Entrez Gene 172961 Entrez gene
SwissProt O61825 EMBL-EBI
WormBase CE28877 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606035_AT similar to pecanex homolog cfa
CANINE_2:CFAAFFX.25549.1.S1_S_AT similar to pecanex homolog cfa
CANINE_2:CFAAFFX.25556.1.S1_S_AT similar to pecanex homolog cfa
DROSOPHILA_2:1638200_AT pecanex dm
DROSGENOME1:141464_AT pecanex dm
CHICKEN:GGAAFFX.373.1.S1_AT similar to pecanex homolog; pecanex-like 1 gga
CHICKEN:GGAAFFX.373.2.S1_AT similar to pecanex homolog; pecanex-like 1 gga
CHICKEN:GGAAFFX.373.2.S1_S_AT similar to pecanex homolog; pecanex-like 1 gga
HG-U133_PLUS_2:213159_AT pecanex homolog (Drosophila) hs
HG-U133A_2:213159_AT pecanex homolog (Drosophila) hs
HG-U133A:213159_AT pecanex homolog (Drosophila) hs
HU35KSUBA:AA426168_AT pecanex homolog (Drosophila) hs
HU35KSUBC:RC_W46420_AT pecanex homolog (Drosophila) hs
U133_X3P:HS.55947.0.S2_3P_AT pecanex homolog (Drosophila) hs
U133_X3P:HS.55947.0.S1_3P_AT pecanex homolog (Drosophila) hs
U133_X3P:HS.225967.0.S1_3P_AT pecanex homolog (Drosophila) hs
HG-U133A_2:213173_AT pecanex homolog (Drosophila) hs
HG-U133_PLUS_2:213173_AT pecanex homolog (Drosophila) hs
HG-U133A:213173_AT pecanex homolog (Drosophila) hs
HG-U133A_2:215175_AT pecanex homolog (Drosophila) hs
HG-U133_PLUS_2:215175_AT pecanex homolog (Drosophila) hs
HG-U133A:215175_AT pecanex homolog (Drosophila) hs
HG-U95AV2:32012_AT pecanex homolog (Drosophila) hs
HG-U95AV2:36486_AT pecanex homolog (Drosophila) hs
HG-U95C:64325_S_AT pecanex homolog (Drosophila) hs
HG-U133_PLUS_2:238792_AT Pecanex homolog (Drosophila) hs
HG-U133B:238792_AT Pecanex homolog (Drosophila) hs
HG-U133_PLUS_2:239100_X_AT Pecanex homolog (Drosophila) hs
HG-U133B:239100_X_AT Pecanex homolog (Drosophila) hs
HG-U95B:42650_R_AT Pecanex homolog (Drosophila) hs
HG-U95C:52635_AT Pecanex homolog (Drosophila) hs
HG-U95E:81003_I_AT Pecanex homolog (Drosophila) hs
HG-U95E:81004_R_AT Pecanex homolog (Drosophila) hs
HG-U95E:83132_AT Pecanex homolog (Drosophila) hs
HU35KSUBB:RC_R85860_AT Pecanex homolog (Drosophila) hs
HU35KSUBC:RC_N70454_AT Pecanex homolog (Drosophila) hs
MOE430A:1419049_AT pecanex homolog (Drosophila) mm
MOUSE430A_2:1419049_AT pecanex homolog (Drosophila) mm
MOUSE430_2:1419049_AT pecanex homolog (Drosophila) mm
MOE430A:1419047_AT pecanex homolog (Drosophila) mm
MOUSE430A_2:1419047_AT pecanex homolog (Drosophila) mm
MOUSE430_2:1419047_AT pecanex homolog (Drosophila) mm
MG-U74BV2:111726_AT pecanex homolog (Drosophila) mm
MG-U74CV2:134269_AT pecanex homolog (Drosophila) mm
MG-U74BV2:163177_AT pecanex homolog (Drosophila) mm
MOE430A:1419048_AT pecanex homolog (Drosophila) mm
MOUSE430A_2:1419048_AT pecanex homolog (Drosophila) mm
MOUSE430_2:1419048_AT pecanex homolog (Drosophila) mm
MOE430B:1460580_AT pecanex homolog (Drosophila) mm
MOUSE430_2:1460580_AT pecanex homolog (Drosophila) mm
MU19KSUBB:TC32288_AT Pecanex homolog (Drosophila) (Pcnx), mRNA mm
MU19KSUBC:TC38245_AT Pecanex homolog (Drosophila) (Pcnx), mRNA mm
MU19KSUBC:TC38245_G_AT Pecanex homolog (Drosophila) (Pcnx), mRNA mm
RG-U34B:RC_AI009650_AT pecanex homolog (Drosophila) (predicted) rn
RAE230A:1399034_AT pecanex homolog (Drosophila) (predicted) rn
RAT230_2:1399034_AT pecanex homolog (Drosophila) (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK95862 Hypothetical protein B0511.12 [Caenorhabditis elegans] ref|NP_492790.1| B0511.12 [Caenorhabditis elegans] 0.0
blast T33123 hypothetical protein B0511.12 - Caenorhabditis elegans 0.0
blast CAE67320 Hypothetical protein CBG12782 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007735 EMBL-EBI Pecanex 1.0E-126
Pfam IPR007735 EMBL-EBI Pecanex 1.0E-126
Pfam IPR007735 EMBL-EBI Pecanex 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492790.1 6 196-218,223-242,257-279,313-335,361-383,477-499
B0511.12 6 196-218,223-242,257-279,313-335,361-383,477-499
SNAP00000031166 6 653-675,680-699,714-736,770-792,818-840,934-956
GENEFINDER00000031173 8 38-55,62-84,854-876,881-900,915-937,971-993,1019-1041,1135-1157
Sequence
Target Sequence 
>C. ELEGANS:173715_S_AT
gacgaggatcctggttattccaaccatcacgtggaatggctggaaaaatagtgtacacct
ggtatccatcgcatcctctgagaaatcgaagaagtcatgttggagatcacattcatttga
tatcacttccacttatgccaaatggtctggtacctgttgctgaaaaaggtcttcgactac
ttgctccgcatgatattaatacattaggattgtcaggatgcaccacacaggaacaacaag
aattccaaacccgctatattgacgtactgatcctctcaaaaatcgtgactggtaccgtat
ccgcccgtacttcatttcccaaaaaaccaccaattccaccgccaaacattcgagatcggg
aacgggatcgagagactggaacatcatcttctgcccttccaacaacaactgcatcaaatc
ctttggaaactacaggaaactcatctaccgattcagtaccactggaaacatcggagctac
ctgcattgacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAGGATCCTGGTTATTCCAACC 464 377 6348 Antisense
TAGTGTACACCTGGTATCCATCGCA 103 655 6396 Antisense
TTGATATCACTTCCACTTATGCCAA 86 707 6464 Antisense
GCCAAATGGTCTGGTACCTGTTGCT 124 279 6484 Antisense
TCGACTACTTGCTCCGCATGATATT 620 601 6520 Antisense
GCTATATTGACGTACTGATCCTCTC 130 303 6600 Antisense
AAATCGTGACTGGTACCGTATCCGC 555 117 6627 Antisense
ATTCCACCGCCAAACATTCGAGATC 405 7 6680 Antisense
AGAGACTGGAACATCATCTTCTGCC 94 69 6718 Antisense
CTCATCTACCGATTCAGTACCACTG 575 227 6787 Antisense
ACATCGGAGCTACCTGCATTGACAT 236 105 6815 Antisense
Sequence Source Affymetrix Proprietary Database