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[173714_at]

Description AU109878 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T09B4.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109878 /WB_GENE_ID=T09B4.10 /WP=CE13475 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk712b7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 87      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 83      6grp_total > 96      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 491.6
(2.2)
P 		243.7
(-3)
P 		321.5
(-1.4)
P 		530.1
(3)
P 		286
B 294.5
(-2.7)
P 		346.3
(-1.5)
P 		283.8
(-3)
P 		539.1
(3)
P 		255
C 362.1
(-2)
P 		327.3
(-3)
P 		372.9
(-1.7)
P 		542.4
(3)
P 		215
avr 382.7
(-1) 		305.8
(-3) 		326.1
(-2.5) 		537.2
(3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 369
1 2 3 4 5 6 range
A 432.8
(-0.9)
P 		350.4
(-3)
P 		455.1
(-0.3)
P 		507.5
(1.1)
P 		534.7
(1.8)
P 		582.3
(3)
P 		232
B 449.4
(-0.1)
P 		362.4
(-1.5)
P 		269.5
(-3)
P 		612.2
(2.6)
P 		542.9
(1.4)
P 		638.8
(3)
P 		369
C 449.1
(-0.5)
P 		400.2
(-1.7)
P 		344.1
(-3)
P 		396
(-1.8)
P 		412.6
(-1.4)
P 		594.9
(3)
P 		251
avr 443.8
(-0.9) 		371
(-2.6) 		356.2
(-3) 		505.2
(0.6) 		496.7
(0.4) 		605.3
(3) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 179
(3)
P 		52.9
(-3)
P 		84.1
(-1.5)
P 		77.6
(-1.8)
P 		126
B 93.9
(0.4)
P 		85.5
(-0.6)
P 		65.8
(-3)
P 		114.9
(3)
P 		49
C 119.9
(1.4)
P 		94.1
(-2.6)
P 		130
(3)
P 		91.5
(-3)
P 		39
avr 130.9
(3) 		77.5
(-3) 		93.3
(-1.2) 		94.7
(-1.1) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 79.8
(-3)
P 		124.6
(0.3)
P 		99.1
(-1.6)
P 		128.7
(0.6)
P 		161.4
(3)
P 		141.8
(1.6)
P 		82
B 156.4
(0.2)
P 		120.6
(-1.1)
P 		65.4
(-3)
P 		162.2
(0.4)
P 		220.6
(2.4)
P 		238.2
(3)
P 		173
C 166.5
(1.4)
P 		122.1
(-0.9)
P 		87.6
(-2.6)
P 		79.6
(-3)
P 		133.5
(-0.3)
P 		199.1
(3)
P 		120
avr 134.2
(-0.2) 		122.4
(-0.9) 		84
(-3) 		123.5
(-0.8) 		171.8
(1.8) 		193
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22921
Sequence Type Exemplar sequence
Representative Public ID AU109878 NCBI
Target Description AU109878 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T09B4.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109878 /WB_GENE_ID=T09B4.10 /WP=CE13475 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk712b7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059380 NCBI Caenorhabditis elegans C-term of Hsp70-iNteracting protein (CHIP family) family member (chn-1) (chn-1) mRNA, complete cds. 11/11 A 
T09B4.10.1 ENSEMBL cdna:known chromosome:CEL140:I:6189451:6191991:-1 gene:T09B4.10 11/11 None
T09B4.10.2 ENSEMBL cdna:known chromosome:CEL140:I:6189451:6192015:-1 gene:T09B4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6189455-6191911(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol chn-1
Ensembl T09B4.10
Entrez Gene 172303 Entrez gene
SwissProt Q9BMU2 EMBL-EBI
WormBase CE29991 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259019_AT tetratricopeptide repeat (TPR)-containing protein / U-box domain-containing protein at
CANINE:1583182_AT similar to STIP1 homology and U-box containing protein 1 cfa
CANINE_2:CFA.12154.1.A1_AT similar to STIP1 homology and U-box containing protein 1 cfa
CANINE_2:CFA.14571.1.S1_AT similar to STIP1 homology and U-box containing protein 1 cfa
CANINE_2:CFAAFFX.30010.1.S1_S_AT similar to STIP1 homology and U-box containing protein 1 cfa
DROSOPHILA_2:1623826_AT dm
DROSGENOME1:144169_AT dm
CHICKEN:GGA.6217.2.S1_S_AT STIP1 homology and U-box containing protein 1 gga
CHICKEN:GGAAFFX.13102.1.S1_S_AT STIP1 homology and U-box containing protein 1 gga
HG-U133_PLUS_2:233049_X_AT STIP1 homology and U-box containing protein 1 hs
HG-U133B:233049_X_AT STIP1 homology and U-box containing protein 1 hs
HG-U133A:217934_X_AT STIP1 homology and U-box containing protein 1 hs
HG-U133_PLUS_2:217934_X_AT STIP1 homology and U-box containing protein 1 hs
HG-FOCUS:217934_X_AT STIP1 homology and U-box containing protein 1 hs
HG-U133A_2:217934_X_AT STIP1 homology and U-box containing protein 1 hs
U133_X3P:HS.25197.1.S1_3P_A_AT STIP1 homology and U-box containing protein 1 hs
HG-U133_PLUS_2:227625_S_AT STIP1 homology and U-box containing protein 1 hs
HG-U133B:227625_S_AT STIP1 homology and U-box containing protein 1 hs
HG-U95C:65827_AT STIP1 homology and U-box containing protein 1 hs
HG-U95E:87929_I_AT STIP1 homology and U-box containing protein 1 hs
HG-U95E:87930_R_AT STIP1 homology and U-box containing protein 1 hs
HG-U95C:63284_AT STIP1 homology and U-box containing protein 1 hs
MG-U74AV2:160318_AT STIP1 homology and U-Box containing protein 1 mm
MG-U74BV2:164951_F_AT STIP1 homology and U-Box containing protein 1 mm
MG-U74CV2:165813_AT STIP1 homology and U-Box containing protein 1 mm
MOE430A:1434412_X_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430A_2:1434412_X_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430_2:1434412_X_AT STIP1 homology and U-Box containing protein 1 mm
MOE430A:1416580_A_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430A_2:1416580_A_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430_2:1416580_A_AT STIP1 homology and U-Box containing protein 1 mm
MOE430B:1429069_AT STIP1 homology and U-Box containing protein 1 mm
MOUSE430_2:1429069_AT STIP1 homology and U-Box containing protein 1 mm
RG-U34B:RC_AA849721_AT STIP1 homology and U-Box containing protein 1 (predicted) rn
RAE230A:1398910_AT STIP1 homology and U-Box containing protein 1 (predicted) rn
RAT230_2:1398910_AT STIP1 homology and U-Box containing protein 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB53012 C-term of hsp70-interacting protein (chip family) protein 1 [Caenorhabditis elegans] ref|NP_491781.2| C-term of Hsp70-iNteracting protein (CHIP family) family member (chn-1) [Caenorhabditis elegans] gb|AAG50227.1| Hsp70-interacting protein [Caenorhabditis elegans] 1.0E-153
blast CAE67129 Hypothetical protein CBG12551 [Caenorhabditis briggsae] 1.0E-136
blast AAH51775 STIP1 homology and U-box containing protein 1 [Danio rerio] ref|NP_955968.1| STIP1 homology and U-box containing protein 1 [Danio rerio] 8.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 1.4E-5
Pfam IPR001440 EMBL-EBI TPR repeat 2.9E-9
Pfam IPR001440 EMBL-EBI TPR repeat 2.7E-5
Pfam IPR003613 EMBL-EBI Zn-finger, modified RING 5.1E-56
Sequence
Target Sequence 
>C. ELEGANS:173714_AT
ggaggcatggtttaaatactattcagaatattgaaaaattcaacattaaacattcctggc
tgcttctcaatgcaacttcttcacttttctacatgtttcagttctttgcatttttttttc
ggatttttaaacttttattgtttgaacgctgtaccctccttttctgttctaccggtattt
gtatcttggtgtattttttagcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGCATGGTTTAAATACTATTCA 578 513 818 Antisense
TCAACATTAAACATTCCTGGCTGCT 274 629 857 Antisense
TTAAACATTCCTGGCTGCTTCTCAA 118 685 863 Antisense
TGGCTGCTTCTCAATGCAACTTCTT 593 545 874 Antisense
TGCTTCTCAATGCAACTTCTTCACT 484 579 878 Antisense
ACTTCTTCACTTTTCTACATGTTTC 665 103 892 Antisense
TCTACATGTTTCAGTTCTTTGCATT 100 615 905 Antisense
TTATTGTTTGAACGCTGTACCCTCC 133 679 952 Antisense
TCCTTTTCTGTTCTACCGGTATTTG 396 583 974 Antisense
GTTCTACCGGTATTTGTATCTTGGT 4 445 983 Antisense
GTATCTTGGTGTATTTTTTAGCTTT 149 455 998 Antisense
Sequence Source Affymetrix Proprietary Database