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[173713_at]

Description AV203658 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F59B10.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203658 /WB_GENE_ID=F59B10.4 /WP=CE01593 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk579d5 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 97      6grp_total > 98      4grp_total > 04      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 153.1
(-1.4)
P 		45.5
(-2.8)
A 		30.7
(-3)
A 		491.5
(3)
P 		461
B 144.6
(-2)
P 		73.1
(-3)
A 		75.4
(-3)
P 		510.2
(3)
P 		437
C 174.3
(-1.5)
P 		93.8
(-2.4)
A 		39.8
(-3)
A 		583.2
(3)
P 		543
avr 157.3
(-1.6) 		70.8
(-2.7) 		48.6
(-3) 		528.3
(3) 		480

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 126.1
(-0.3)
A 		90.5
(-2.3)
P 		116.2
(-0.9)
P 		78.3
(-3)
P 		165.2
(1.8)
P 		186.3
(3)
P 		108
B 74.1
(-2.4)
P 		96.2
(-1.3)
P 		60.6
(-3)
P 		131.3
(0.4)
P 		164.5
(2)
P 		185.7
(3)
P 		125
C 96.3
(-2)
P 		93.6
(-2.2)
P 		78
(-3)
P 		89.1
(-2.4)
A 		126.7
(-0.3)
P 		188.2
(3)
P 		110
avr 98.8
(-2.2) 		93.4
(-2.5) 		84.9
(-3) 		99.6
(-2.1) 		152.1
(1) 		186.7
(3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 55.8
(1.5)
P 		9.9
(-2.8)
A 		8
(-3)
A 		71.9
(3)
P 		64
B 46.1
(-1.1)
P 		18
(-3)
A 		17.5
(-3)
P 		108.7
(3)
P 		91
C 57.7
(0.1)
P 		27
(-2.1)
A 		13.9
(-3)
A 		98.3
(3)
P 		84
avr 53.2
(0) 		18.3
(-2.6) 		13.1
(-3) 		93
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 23.2
(-2.3)
A 		32.2
(-0.5)
P 		25.3
(-1.9)
P 		19.9
(-3)
P 		49.8
(3)
P 		45.4
(2.1)
P 		30
B 25.8
(-1.8)
P 		32
(-1.1)
P 		14.7
(-3)
P 		34.8
(-0.8)
P 		66.8
(2.7)
P 		69.3
(3)
P 		55
C 35.7
(-0.6)
P 		28.6
(-1.6)
P 		19.9
(-2.7)
P 		17.9
(-3)
A 		41
(0.1)
P 		63
(3)
P 		45
avr 28.2
(-1.7) 		30.9
(-1.3) 		20
(-3) 		24.2
(-2.4) 		52.5
(2) 		59.2
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173713_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23460
Sequence Type Exemplar sequence
Representative Public ID AV203658 NCBI
Target Description AV203658 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F59B10.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203658 /WB_GENE_ID=F59B10.4 /WP=CE01593 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk579d5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027048(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027048 NCBI Caenorhabditis elegans F59B10.4b (F59B10.4) mRNA, complete cds. 11/11 None
F59B10.4b ENSEMBL cdna:known chromosome:CEL140:II:10513753:10516337:-1 gene:F59B10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174616 2 1 NM_001027048 173713_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10513811-10518987(-) 100.0 100.0
Public Domain and Genome References
Ensembl F59B10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04739 Hypothetical protein F59B10.4b [Caenorhabditis elegans] ref|NP_001022219.1| F59B10.4b [Caenorhabditis elegans] 1.0E-113
blast CAA88598 Hypothetical protein F59B10.4a [Caenorhabditis elegans] ref|NP_001022218.1| F59B10.4a [Caenorhabditis elegans] 1.0E-104
blast Q09952 Hypothetical protein F59B10.4 in chromosome II 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022219.1 4 16-38,42-64,73-95,128-150
F59B10.4b 4 16-38,42-64,73-95,128-150
Sequence
Target Sequence 
>C. ELEGANS:173713_AT
ttaattttatttgacctcttcttgagaccccctggcatgacgtggcttttcttgccaaga
ccatttttgtacattctcatttctctcattcttctttccaaatattttcaagttttcggt
gattcgtgacgagttctgcatctgcggggaaattgtgatccggactcggtgtctttttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATTTTATTTGACCTCTTCTTGA 310 685 814 Antisense
TTATTTGACCTCTTCTTGAGACCCC 471 679 820 Antisense
CTGGCATGACGTGGCTTTTCTTGCC 414 241 845 Antisense
GTGGCTTTTCTTGCCAAGACCATTT 372 491 855 Antisense
GACCATTTTTGTACATTCTCATTTC 493 383 872 Antisense
TCTCTCATTCTTCTTTCCAAATATT 215 613 895 Antisense
TTCAAGTTTTCGGTGATTCGTGACG 378 685 920 Antisense
ATTCGTGACGAGTTCTGCATCTGCG 288 9 935 Antisense
GAGTTCTGCATCTGCGGGGAAATTG 552 395 944 Antisense
GGGGAAATTGTGATCCGGACTCGGT 314 497 959 Antisense
TGATCCGGACTCGGTGTCTTTTTGT 24 565 969 Antisense
Sequence Source Affymetrix Proprietary Database