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[173711_s_at]

Description AV177017 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C17G10.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV177017 /WB_GENE_ID=C17G10.6 /WP=CE01790 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk522a1 : 3prime end, single read.
Cluster 6grp_total > 95      4grp_total > 05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 135.7
(0.5)
A 		15.2
(-2.9)
A 		12.4
(-3)
A 		224.2
(3)
A 		212
B 101.2
(-1)
A 		24.9
(-2.8)
A 		14.4
(-3)
A 		279.5
(3)
A 		265
C 133.2
(-0.1)
A 		33.3
(-2.8)
A 		24.1
(-3)
A 		249.5
(3)
A 		225
avr 123.4
(-0.3) 		24.5
(-2.8) 		17
(-3) 		251.1
(3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 96.7
(-0.6)
A 		15
(-3)
A 		16.1
(-3)
A 		122.5
(0.2)
A 		218.4
(3)
P 		187.3
(2.1)
A 		203
B 79
(-0.8)
A 		19.9
(-2.7)
A 		12
(-3)
A 		98.8
(-0.1)
A 		191.1
(3)
P 		141.9
(1.4)
P 		179
C 62.2
(-1.7)
A 		59.2
(-1.8)
A 		10.8
(-3)
A 		138
(0.1)
A 		154.9
(0.5)
A 		255.3
(3)
P 		245
avr 79.3
(-0.8) 		31.4
(-2.4) 		13
(-3) 		119.8
(0.5) 		188.1
(2.8) 		194.8
(3) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 49.4
(3)
A 		3.3
(-3)
A 		3.2
(-3)
A 		32.8
(0.8)
A 		46
B 32.3
(0.1)
A 		6.1
(-2.7)
A 		3.3
(-3)
A 		59.6
(3)
A 		56
C 44.1
(3)
A 		9.6
(-2.8)
A 		8.4
(-3)
A 		42.1
(2.7)
A 		36
avr 41.9
(2.6) 		6.3
(-2.8) 		5
(-3) 		44.8
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 17.8
(-1.6)
A 		5.3
(-2.8)
A 		3.5
(-3)
A 		31.1
(-0.3)
A 		65.9
(3)
P 		45.6
(1)
A 		62
B 27.5
(-1)
A 		6.6
(-2.7)
A 		2.9
(-3)
A 		26.2
(-1.1)
A 		77.7
(3)
P 		52.9
(1)
P 		75
C 23.1
(-1.5)
A 		18.1
(-1.9)
A 		2.8
(-3)
A 		27.8
(-1.2)
A 		50.1
(0.4)
A 		85.5
(3)
P 		83
avr 22.8
(-1.1) 		10
(-2.3) 		3.1
(-3) 		28.4
(-0.5) 		64.6
(3) 		61.3
(2.7) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173711_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23645
Sequence Type Exemplar sequence
Representative Public ID AV177017 NCBI
Target Description AV177017 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C17G10.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV177017 /WB_GENE_ID=C17G10.6 /WP=CE01790 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk522a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026799 NCBI Caenorhabditis elegans C17G10.6a (C17G10.6) mRNA, complete cds. 11/11 None
SNAP00000029026 ENSEMBL cdna:SNAP chromosome:CEL140:II:5599899:5603176:-1 11/11 None
GENEFINDER00000029031 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5598422:5603263:-1 11/11 None
C17G10.6a ENSEMBL cdna:known chromosome:CEL140:II:5599899:5603263:-1 gene:C17G10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026800 6/11 Cross Hyb Matching Probes None
C17G10.6b 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173948 2 1 NM_001026799 173711_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5599897-5603262(-) 78.17 100.0
Public Domain and Genome References
Ensembl C17G10.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR25656 Hypothetical protein C17G10.6a [Caenorhabditis elegans] ref|NP_001021970.1| C17G10.6a [Caenorhabditis elegans] pir||T34103 hypothetical protein C17G10.6 - Caenorhabditis elegans 1.0E-113
blast AAR25656 Hypothetical protein C17G10.6a [Caenorhabditis elegans] ref|NP_001021970.1| C17G10.6a [Caenorhabditis elegans] pir||T34103 hypothetical protein C17G10.6 - Caenorhabditis elegans 2.0E-96
blast AAR25657 Hypothetical protein C17G10.6b [Caenorhabditis elegans] ref|NP_001021971.1| C17G10.6b [Caenorhabditis elegans] 2.0E-82
blast AAR25657 Hypothetical protein C17G10.6b [Caenorhabditis elegans] ref|NP_001021971.1| C17G10.6b [Caenorhabditis elegans] 3.0E-82
blast CAE59149 Hypothetical protein CBG02454 [Caenorhabditis briggsae] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.7E-5
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.7E-5
Sequence
Target Sequence 
>C. ELEGANS:173711_S_AT
acaaccacttccacagaactataatattccacccgatcaagtaccatatccccatccaga
tgcatatggctacacgtttccaacagttactacaacaaccacaatgcctccatcataccc
gtattatcccggaaaaataggggatgattatcataactttgagagtatggattgtaagca
agaacgggagaactacgaagaaaatgaagatggagatgattactcggaagagaaaaaaca
aaagaaaaagaagaaaaaatcaaagaaaaataacaaaagaaaaggaaagaagaagagcaa
aaaaggaaagaaaggaagaaaaaatcatttgagtttagacttccttacgtcgaaagagaa
aatcgatcagggtaagagaaatcgagggcagattcttgatgaattacatgctggtcaaga
tttgaagaaacttcaaaagtcttccaaatcaggagaatcaggtgttgattgtgcaactgc
agtcgacgagttccccatgaaatgtggtgcttggaaatctgcaggattctgtgatacaaa
tcaagcaacacaatttttatggtgtcgtaaaacctgtctctgctcatcgacaatcagcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACCACTTCCACAGAACTATAAT 379 113 1435 Antisense
AATATTCCACCCGATCAAGTACCAT 107 175 1457 Antisense
TACCATATCCCCATCCAGATGCATA 43 651 1476 Antisense
CAGATGCATATGGCTACACGTTTCC 140 207 1491 Antisense
GCTACACGTTTCCAACAGTTACTAC 194 301 1503 Antisense
TCCATCATACCCGTATTATCCCGGA 247 591 1543 Antisense
TGAGTTTAGACTTCCTTACGTCGAA 685 565 1764 Antisense
TGTGCAACTGCAGTCGACGAGTTCC 201 557 1904 Antisense
GTCGACGAGTTCCCCATGAAATGTG 535 473 1916 Antisense
TGGTGTCGTAAAACCTGTCTCTGCT 339 553 1994 Antisense
GTCTCTGCTCATCGACAATCAGCAC 283 471 2010 Antisense
Sequence Source Affymetrix Proprietary Database