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[173710_at]

Description AV196772 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F58G11.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196772 /WB_GENE_ID=F58G11.3 /WP=CE11404 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658c2 : 5prime end, single read.
Cluster 6grp_total > 87      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 1.8
(-3)
A 		6.7
(-2.7)
A 		7.5
(-2.6)
A 		98.1
(3)
P 		96
B 3.3
(-3)
A 		4.7
(-2.9)
A 		3.9
(-3)
A 		147.7
(3)
P 		144
C 3.7
(-2.9)
A 		2.1
(-3)
A 		38.7
(-1.2)
A 		120.9
(3)
P 		119
avr 2.9
(-3) 		4.5
(-2.9) 		16.7
(-2.3) 		122.2
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 550
1 2 3 4 5 6 range
A 1.8
(-3)
A 		1.3
(-3)
A 		5.1
(-2.9)
A 		21.9
(-2.7)
A 		200.7
(0.1)
P 		383.8
(3)
P 		383
B 2
(-3)
A 		4
(-3)
A 		14.1
(-2.9)
A 		46
(-2.5)
A 		222
(-0.4)
P 		518.4
(3)
P 		516
C 3.9
(-3)
A 		1.8
(-3)
A 		6.1
(-3)
A 		59.3
(-2.4)
P 		194.7
(-0.9)
P 		551.6
(3)
P 		550
avr 2.6
(-3) 		2.4
(-3) 		8.4
(-2.9) 		42.4
(-2.5) 		205.8
(-0.5) 		484.6
(3) 		482
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 0.7
(-3)
A 		1.5
(-2.6)
A 		2
(-2.4)
A 		14.4
(3)
P 		14
B 1.1
(-3)
A 		1.2
(-2.9)
A 		0.9
(-3)
A 		31.5
(3)
P 		31
C 1.2
(-2.8)
A 		0.6
(-3)
A 		13.5
(0.9)
A 		20.4
(3)
P 		20
avr 1
(-3) 		1.1
(-3) 		5.5
(-1.7) 		22.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.5
(-3)
A 		1.1
(-2.9)
A 		5.6
(-2.7)
A 		60.6
(0.9)
P 		93.5
(3)
P 		93
B 0.7
(-3)
A 		1.3
(-3)
A 		3.4
(-2.9)
A 		12.2
(-2.6)
A 		90.2
(-0.2)
P 		193.3
(3)
P 		193
C 1.4
(-3)
A 		0.6
(-3)
A 		1.6
(-3)
A 		11.9
(-2.6)
P 		63
(-1)
P 		184.7
(3)
P 		184
avr 0.8
(-3) 		0.8
(-3) 		2
(-3) 		9.9
(-2.7) 		71.3
(-0.3) 		157.2
(3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25366
Sequence Type Exemplar sequence
Representative Public ID AV196772 NCBI
Target Description AV196772 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F58G11.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196772 /WB_GENE_ID=F58G11.3 /WP=CE11404 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658c2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073983 NCBI Caenorhabditis elegans F58G11.3 (F58G11.3) mRNA, complete cds. 11/11 None
F58G11.3 ENSEMBL cdna:known chromosome:CEL140:V:13671959:13674539:-1 gene:F58G11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13672009-13674534(-) 98.36 100.0
Public Domain and Genome References
Gene Title
Ensembl F58G11.3
Entrez Gene 179856 Entrez gene
SwissProt P90898 EMBL-EBI
WormBase CE11404 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03154 Hypothetical protein F58G11.3 [Caenorhabditis elegans] ref|NP_506384.1| F58G11.3 [Caenorhabditis elegans] 0.0
blast CAE71129 Hypothetical protein CBG17983 [Caenorhabditis briggsae] 2.0E-69
blast CAA86317 Hypothetical protein C38D4.4 [Caenorhabditis elegans] ref|NP_497988.1| C38D4.4 [Caenorhabditis elegans] 2.0E-63
Sequence
Target Sequence 
>C. ELEGANS:173710_AT
atctcccaggcgtagttgaagcagtgctcctgacacgtattttataatatttatgttttt
tttgaatatttttcgttagtatttatatctgaattttgaaccattttcgctattttcgtt
tttatcacactaaatactagtgccgacaatctttttaaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCCCAGGCGTAGTTGAAGCAGT 253 33 2000 Antisense
AGGCGTAGTTGAAGCAGTGCTCCTG 156 53 2007 Antisense
GAAGCAGTGCTCCTGACACGTATTT 618 341 2017 Antisense
GCAGTGCTCCTGACACGTATTTTAT 407 311 2020 Antisense
TGCTCCTGACACGTATTTTATAATA 654 581 2024 Antisense
ATTTTTCGTTAGTATTTATATCTGA 582 15 2067 Antisense
ATCTGAATTTTGAACCATTTTCGCT 3 35 2086 Antisense
TGAACCATTTTCGCTATTTTCGTTT 67 575 2096 Antisense
TTTCGTTTTTATCACACTAAATACT 372 671 2113 Antisense
AATACTAGTGCCGACAATCTTTTTA 11 173 2132 Antisense
TAGTGCCGACAATCTTTTTAAAAAT 23 399 2137 Antisense
Sequence Source Affymetrix Proprietary Database