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[173709_at]

Description AV191845 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C02B10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV191845 /WB_GENE_ID=C02B10.2 /WP=CE24776 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk598f11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 98      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 91      6grp_total > 97      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 208.4
(-1)
P 		134.5
(-3)
P 		166.5
(-2.2)
P 		361.4
(3)
P 		227
B 230.2
(-0.1)
P 		130.8
(-3)
P 		192.4
(-1.2)
P 		336.1
(3)
P 		205
C 257.5
(0.7)
P 		202
(-2.1)
P 		184.3
(-3)
P 		303.7
(3)
P 		119
avr 232
(-0.4) 		155.8
(-3) 		181.1
(-2.1) 		333.7
(3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 153.9
(-3)
P 		179.7
(-2)
P 		161.9
(-2.7)
P 		177.4
(-2.1)
P 		250.2
(0.8)
P 		307.5
(3)
P 		154
B 193.8
(-1.2)
P 		156.5
(-2.4)
P 		160.2
(-2.3)
P 		137.5
(-3)
P 		263.1
(1)
P 		324
(3)
P 		187
C 181.7
(-1.1)
P 		133.9
(-3)
P 		185.3
(-1)
P 		274.8
(2.5)
P 		256.9
(1.8)
P 		288.3
(3)
P 		154
avr 176.5
(-2.2) 		156.7
(-3) 		169.1
(-2.5) 		196.6
(-1.4) 		256.7
(1) 		306.6
(3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 75.9
(3)
P 		29.2
(-3)
P 		43.5
(-1.2)
P 		52.9
(0)
P 		47
B 73.4
(3)
P 		32.3
(-3)
P 		44.6
(-1.2)
P 		71.6
(2.7)
P 		41
C 85.3
(3)
P 		58.1
(-1.8)
P 		64.2
(-0.7)
P 		51.2
(-3)
P 		34
avr 78.2
(3) 		39.9
(-3) 		50.8
(-1.3) 		58.6
(-0.1) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 28.4
(-3)
P 		63.9
(1.5)
P 		35.3
(-2.1)
P 		45
(-0.9)
P 		75.5
(3)
P 		74.9
(2.9)
P 		47
B 67.4
(-0.8)
P 		52.1
(-1.9)
P 		38.9
(-2.8)
P 		36.4
(-3)
P 		106.9
(2)
P 		120.8
(3)
P 		84
C 67.4
(-0.1)
P 		40.9
(-3)
P 		47.2
(-2.3)
P 		55.3
(-1.4)
P 		83.1
(1.6)
P 		96.5
(3)
P 		56
avr 54.4
(-1.5) 		52.3
(-1.8) 		40.5
(-3) 		45.6
(-2.5) 		88.5
(2.1) 		97.4
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24955
Sequence Type Exemplar sequence
Representative Public ID AV191845 NCBI
Target Description AV191845 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C02B10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV191845 /WB_GENE_ID=C02B10.2 /WP=CE24776 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk598f11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068320 NCBI Caenorhabditis elegans C02B10.2 (C02B10.2) mRNA, complete cds. 11/11 None
C02B10.2 ENSEMBL cdna:known chromosome:CEL140:IV:5090280:5091023:-1 gene:C02B10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5090296-5091030(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02B10.2
Entrez Gene 177282 Entrez gene
SwissProt O44445 EMBL-EBI
WormBase CE24776 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68679 Hypothetical protein C02B10.2 [Caenorhabditis elegans] ref|NP_500721.1| C02B10.2 [Caenorhabditis elegans] 5.0E-53
blast CAE72738 Hypothetical protein CBG19979 [Caenorhabditis briggsae] 4.0E-49
Sequence
Target Sequence 
>C. ELEGANS:173709_AT
aagaagaatatgaccttcgcccctctcgcgtctctgaaaattcacttatcacctaacaat
ttttctccaaaatcacaccattttccccatttgaatgtatgaatattccactcaccatcc
gcttctagtcattgtttttgccatttttctacttaaaacaataacataaacgagtttttt
gtgtgttgattaactttctccaatttgaacactaaaccctgtctgatgcggcaaacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAGAATATGACCTTCGCCCCTC 410 151 390 Antisense
GAAAATTCACTTATCACCTAACAAT 422 353 425 Antisense
TTATCACCTAACAATTTTTCTCCAA 498 679 435 Antisense
AATTTTTCTCCAAAATCACACCATT 513 175 447 Antisense
TCACACCATTTTCCCCATTTGAATG 23 627 462 Antisense
TGTATGAATATTCCACTCACCATCC 607 559 485 Antisense
TTGCCATTTTTCTACTTAAAACAAT 76 703 527 Antisense
TTGTGTGTTGATTAACTTTCTCCAA 139 709 568 Antisense
TAACTTTCTCCAATTTGAACACTAA 211 639 580 Antisense
GAACACTAAACCCTGTCTGATGCGG 596 351 596 Antisense
AACCCTGTCTGATGCGGCAAACTTT 63 143 604 Antisense
Sequence Source Affymetrix Proprietary Database