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[173708_s_at] DNAJ protein like /// ---

Description CEC5205 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0035.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C12520 /WB_GENE_ID=B0035.2 /WP=CE05160 /CHR=4 /FEA=Genomic Cluster /DEF=DNAJ protein like; C.elegans cDNA clone yk151h6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 60      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 64      6grp_total > 70      4grp_total > 50      6grp_highest_sub > 04      6grp_cgc > 94      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 775
1 2 3 4 range
A 409.1
(-2.9)
P 		1087.8
(3)
P 		823.6
(0.7)
P 		396
(-3)
P 		692
B 506.1
(-0.9)
P 		857.2
(3)
P 		745
(1.8)
P 		313
(-3)
P 		544
C 451.4
(-2.5)
P 		843.2
(3)
P 		677.6
(0.7)
P 		417.5
(-3)
P 		426
avr 455.5
(-2.1) 		929.4
(3) 		748.7
(1) 		375.5
(-3) 		554

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 688
1 2 3 4 5 6 range
A 685.8
(-1.6)
P 		662.6
(-1.8)
P 		1212.8
(3)
P 		896.8
(0.2)
P 		778
(-0.8)
P 		524.8
(-3)
P 		688
B 880.7
(-0.2)
P 		736.7
(-2)
P 		737.4
(-2)
P 		1140.9
(3)
P 		828.6
(-0.9)
P 		654.3
(-3)
P 		487
C 889.6
(2.5)
P 		692.2
(-1.7)
P 		633.9
(-3)
P 		911.8
(3)
P 		768.6
(-0.1)
P 		701.4
(-1.5)
P 		278
avr 818.7
(0.2) 		697.2
(-1.8) 		861.4
(0.9) 		983.2
(3) 		791.7
(-0.2) 		626.8
(-3) 		356
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 148.9
(0.1)
P 		236.1
(3)
P 		215.3
(2.3)
P 		58
(-3)
P 		178
B 161.4
(0.9)
P 		211.7
(3)
P 		172.6
(1.4)
P 		66.7
(-3)
P 		145
C 149.4
(-0.2)
P 		242.4
(3)
P 		236.2
(2.8)
P 		70.4
(-3)
P 		172
avr 153.2
(0.2) 		230.1
(3) 		208
(2.2) 		65
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 126.4
(-3)
P 		235.6
(1.8)
P 		264.1
(3)
P 		227.5
(1.4)
P 		234.8
(1.7)
P 		127.8
(-2.9)
P 		138
B 306.4
(1.8)
P 		245.2
(-0.5)
P 		179.1
(-3)
P 		302.2
(1.7)
P 		336.7
(3)
P 		244
(-0.5)
P 		158
C 329.7
(3)
P 		211.2
(-1.2)
P 		161.3
(-3)
P 		183.4
(-2.2)
P 		248.7
(0.1)
P 		234.8
(-0.4)
P 		168
avr 254.2
(1.4) 		230.7
(-0.6) 		201.5
(-3) 		237.7
(0) 		273.4
(3) 		202.2
(-2.9) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173708_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24757
Sequence Type Exemplar sequence
Representative Public ID CEC5205 NCBI
Target Description CEC5205 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0035.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C12520 /WB_GENE_ID=B0035.2 /WP=CE05160 /CHR=4 /FEA=Genomic Cluster /DEF=DNAJ protein like; C.elegans cDNA clone yk151h6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070247(11), NM_069725(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070247 NCBI Caenorhabditis elegans C47A4.1 (C47A4.1) mRNA, complete cds. 11/11 None
NM_069725 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-2) (dnj-2) mRNA, complete cds. 11/11 A 
SNAP00000017712 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13715875:13716369:-1 11/11 None
GENEFINDER00000017723 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13715875:13716348:-1 11/11 None
SNAP00000035831 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11312685:11313947:-1 11/11 None
GENEFINDER00000035854 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11312685:11313947:-1 11/11 None
B0035.2 ENSEMBL cdna:known chromosome:CEL140:IV:11312444:11313951:-1 gene:B0035.2 11/11 A 
C47A4.1 ENSEMBL cdna:known chromosome:CEL140:IV:13715875:13716638:-1 gene:C47A4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11312485-11313954(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNAJ protein like

Gene Symbol dnj-2
Ensembl B0035.2
C47A4.1
Entrez Gene 178043 Entrez gene
183525 Entrez gene
SwissProt Q9U3L9 EMBL-EBI
WormBase CE05160 Wormbase
CE19737 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264427_AT DNAJ heat shock N-terminal domain-containing protein at
ATGENOME1:14136_AT DNAJ heat shock N-terminal domain-containing protein at
CANINE_2:CFAAFFX.5449.1.S1_AT similar to CG7872-PA cfa
DROSOPHILA_2:1636142_AT dm
DROSGENOME1:154301_AT dm
MG-U74BV2:107789_AT RIKEN cDNA 2010203O07 gene mm
MG-U74CV2:130910_AT RIKEN cDNA 2010203O07 gene mm
MG-U74CV2:140873_R_AT PREDICTED: hypothetical protein LOC72429 [Mus musculus], mRNA sequence mm
Protein Similarities
Method ID Description E-Value
blast CAA97409 Hypothetical protein B0035.2 [Caenorhabditis elegans] ref|NP_502126.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-2) [Caenorhabditis elegans] sp|Q17433|DNJ2_CAEEL DnaJ homolog dnj-2 precursor (DnaJ domain protein 2) 0.0
blast CAE62051 Hypothetical protein CBG06069 [Caenorhabditis briggsae] 1.0E-159
blast CAB62792 Hypothetical protein C47A4.1 [Caenorhabditis elegans] ref|NP_502648.1| C47A4.1 [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 1.99999996490334E-14
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 4.3E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502126.1 1 129-148
B0035.2 1 129-148
SNAP00000035831 1 129-148
GENEFINDER00000035854 1 129-148
Sequence
Target Sequence 
>C. ELEGANS:173708_S_AT
gaatccatctacgatactctcgcatggcacacaattattttcccattaacgatattccga
tacattaaatggacagcactttggtattggagatttgcaattcaaaaggaggaatatgat
gatgacgccaagctttatctcattagaaagtacattggagtttcacaaatggaattcgat
cagaagtacactgatgaagacattgatgatctttttgaacgagaatgctggctgaaacga
aactgtgcaacgtggaaagccgaacgagacgctgcggaacaagaaaaaatggctcaatcg
ggtcggtacaaaaggtataagagatatatgaaaaacgcgggaactatttcgtttgtcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCATCTACGATACTCTCGCAT 324 329 659 Antisense
GATACTCTCGCATGGCACACAATTA 668 423 671 Antisense
GGCACACAATTATTTTCCCATTAAC 601 535 684 Antisense
TCCCATTAACGATATTCCGATACAT 465 597 699 Antisense
AATGGACAGCACTTTGGTATTGGAG 7 163 726 Antisense
ATGATGATGACGCCAAGCTTTATCT 710 45 774 Antisense
AATGGAATTCGATCAGAAGTACACT 629 159 826 Antisense
CTTTTTGAACGAGAATGCTGGCTGA 663 213 869 Antisense
GAGACGCTGCGGAACAAGAAAAAAT 165 395 924 Antisense
AAATGGCTCAATCGGGTCGGTACAA 585 119 945 Antisense
CGCGGGAACTATTTCGTTTGTCGAT 230 245 994 Antisense
Sequence Source Affymetrix Proprietary Database