[Home] | [Total List]

[173707_at] DNAJ protein like

Description CEC5205 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0035.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C12520 /WB_GENE_ID=B0035.2 /WP=CE05160 /CHR=4 /FEA=Genomic Cluster /DEF=DNAJ protein like; C.elegans cDNA clone yk151h6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 02      4grp_high_8_8 > 45      6grp_highest_nonorm > 71      6grp_total > 19      4grp_total > 50      6grp_cgc > 0      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 220.4
(-3)
P 		304.6
(1.6)
P 		330
(3)
P 		253.7
(-1.2)
P 		110
B 223.1
(-1.5)
P 		361.7
(3)
P 		310.4
(1.3)
P 		178.9
(-3)
P 		183
C 209.5
(-3)
P 		441.1
(3)
P 		362.9
(1)
P 		211.3
(-3)
P 		232
avr 217.7
(-2.9) 		369.1
(3) 		334.4
(1.7) 		214.6
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 329.2
(0.6)
P 		227.2
(-2.2)
P 		408.6
(2.8)
P 		343.1
(1)
P 		415.4
(3)
P 		197.6
(-3)
P 		218
B 414
(2.1)
P 		262.5
(-3)
P 		283.8
(-2.3)
P 		441.4
(3)
P 		359.8
(0.3)
P 		307.7
(-1.5)
P 		179
C 370.9
(3)
P 		321.8
(0.8)
P 		239.6
(-3)
P 		324
(0.9)
P 		338.4
(1.5)
P 		343
(1.7)
P 		131
avr 371.4
(3) 		270.5
(-3) 		310.7
(-0.6) 		369.5
(2.9) 		371.2
(3) 		282.8
(-2.3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 80.2
(2.3)
P 		66.1
(0.5)
P 		86.3
(3)
P 		37.1
(-3)
P 		49
B 71.2
(0.9)
P 		89.3
(3)
P 		71.9
(1)
P 		38.1
(-3)
P 		51
C 69.3
(-0.8)
P 		126.8
(3)
P 		126.5
(3)
P 		35.6
(-3)
P 		91
avr 73.6
(0.8) 		94.1
(2.9) 		94.9
(3) 		36.9
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 60.7
(-2)
P 		80.8
(-0.5)
P 		89
(0.2)
P 		87
(0)
P 		125.3
(3)
P 		48.1
(-3)
P 		77
B 144
(2.8)
P 		87.4
(-1.6)
P 		68.9
(-3)
P 		116.9
(0.7)
P 		146.2
(3)
P 		114.7
(0.6)
P 		77
C 137.5
(3)
P 		98.2
(-0.1)
P 		61
(-3)
P 		65.2
(-2.7)
P 		109.5
(0.8)
P 		114.8
(1.2)
P 		77
avr 114.1
(1.6) 		88.8
(-1.2) 		73
(-3) 		89.7
(-1.1) 		127
(3) 		92.5
(-0.8) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24757
Sequence Type Exemplar sequence
Representative Public ID CEC5205 NCBI
Target Description CEC5205 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0035.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C12520 /WB_GENE_ID=B0035.2 /WP=CE05160 /CHR=4 /FEA=Genomic Cluster /DEF=DNAJ protein like; C.elegans cDNA clone yk151h6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069725(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069725 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-2) (dnj-2) mRNA, complete cds. 11/11 None
B0035.2 ENSEMBL cdna:known chromosome:CEL140:IV:11312444:11313951:-1 gene:B0035.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11312485-11313954(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNAJ protein like
Gene Symbol dnj-2
Ensembl B0035.2
Entrez Gene 178043 Entrez gene
WormBase CE05160 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264427_AT DNAJ heat shock N-terminal domain-containing protein at
ATGENOME1:14136_AT DNAJ heat shock N-terminal domain-containing protein at
CANINE_2:CFAAFFX.5449.1.S1_AT similar to CG7872-PA cfa
DROSOPHILA_2:1636142_AT dm
DROSGENOME1:154301_AT dm
MG-U74BV2:107789_AT RIKEN cDNA 2010203O07 gene mm
MG-U74CV2:130910_AT RIKEN cDNA 2010203O07 gene mm
MG-U74CV2:140873_R_AT PREDICTED: hypothetical protein LOC72429 [Mus musculus], mRNA sequence mm
Protein Similarities
Method ID Description E-Value
blast CAA97409 Hypothetical protein B0035.2 [Caenorhabditis elegans] ref|NP_502126.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-2) [Caenorhabditis elegans] sp|Q17433|DNJ2_CAEEL DnaJ homolog dnj-2 precursor (DnaJ domain protein 2) 0.0
blast CAE62051 Hypothetical protein CBG06069 [Caenorhabditis briggsae] 1.0E-159
blast CAB62792 Hypothetical protein C47A4.1 [Caenorhabditis elegans] ref|NP_502648.1| C47A4.1 [Caenorhabditis elegans] 8.0E-91
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 1.99999996490334E-14
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 4.3E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502126.1 1 129-148
B0035.2 1 129-148
Sequence
Target Sequence 
>C. ELEGANS:173707_AT
taactcgttctttctaaattattattcctttatgcagctgttttatcatcaaatttttat
agcatttcatgttttcacttaactcgaatgtttctccgagtttgcgagcataatctactt
ctttcttaccaatattgatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTCGTTCTTTCTAAATTATTAT 584 637 1059 Antisense
AATTATTATTCCTTTATGCAGCTGT 537 175 1075 Antisense
TATTCCTTTATGCAGCTGTTTTATC 654 661 1081 Antisense
TGCAGCTGTTTTATCATCAAATTTT 2 579 1091 Antisense
TTTTATAGCATTTCATGTTTTCACT 533 673 1113 Antisense
TTCATGTTTTCACTTAACTCGAATG 242 689 1124 Antisense
TTCACTTAACTCGAATGTTTCTCCG 383 683 1132 Antisense
ATGTTTCTCCGAGTTTGCGAGCATA 619 47 1146 Antisense
TGCGAGCATAATCTACTTCTTTCTT 485 579 1161 Antisense
ATCTACTTCTTTCTTACCAATATTG 661 29 1171 Antisense
ACTTCTTTCTTACCAATATTGATGT 593 103 1175 Antisense
Sequence Source Affymetrix Proprietary Database