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[173706_at]

Description AV177839_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK154.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV177839 /WB_GENE_ID=ZK154.6 /WP=CE28178 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk534e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 80      6grp_total > 38      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 310.2
(3)
P 		181.2
(-2.2)
P 		161.6
(-3)
P 		209.7
(-1.1)
P 		149
B 215.2
(-1.5)
P 		148.4
(-2.8)
P 		137.8
(-3)
P 		454.8
(3)
P 		317
C 338.5
(1.6)
P 		233.3
(-2.6)
P 		221.8
(-3)
P 		375.5
(3)
P 		154
avr 288
(1) 		187.6
(-2.5) 		173.7
(-3) 		346.7
(3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 180.1
(1.6)
P 		171.1
(0.9)
P 		179.7
(1.6)
P 		119.9
(-3)
P 		163.2
(0.3)
P 		198.2
(3)
P 		78
B 307.4
(3)
P 		198.9
(-0.6)
P 		126.5
(-3)
P 		146
(-2.4)
P 		184.4
(-1.1)
P 		259.2
(1.4)
P 		181
C 354.4
(3)
P 		299.7
(1.5)
P 		130.1
(-3)
P 		149.2
(-2.5)
P 		183.8
(-1.6)
P 		252.8
(0.3)
P 		224
avr 280.6
(3) 		223.2
(0.6) 		145.4
(-2.7) 		138.4
(-3) 		177.1
(-1.4) 		236.7
(1.1) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 112.9
(3)
P 		39.3
(-2.4)
P 		42.2
(-2.2)
P 		30.7
(-3)
P 		82
B 68.6
(0.4)
P 		36.7
(-2.6)
P 		31.9
(-3)
P 		96.9
(3)
P 		65
C 112.1
(3)
P 		67.1
(-2.5)
P 		77.3
(-1.3)
P 		63.3
(-3)
P 		49
avr 97.9
(3) 		47.7
(-3) 		50.5
(-2.7) 		63.6
(-1.1) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 33.2
(-2.4)
P 		60.9
(3)
P 		39.1
(-1.3)
P 		30.4
(-3)
P 		49.2
(0.7)
P 		48.3
(0.5)
P 		31
B 107
(3)
P 		66.2
(-0.2)
P 		30.7
(-3)
P 		38.7
(-2.4)
P 		74.9
(0.5)
P 		96.7
(2.2)
P 		76
C 131.4
(3)
P 		91.5
(0.6)
P 		33.1
(-2.8)
P 		30
(-3)
P 		59.5
(-1.3)
P 		84.6
(0.2)
P 		101
avr 90.5
(3) 		72.9
(1.2) 		34.3
(-2.9) 		33
(-3) 		61.2
(-0.1) 		76.5
(1.5) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25894
Sequence Type Exemplar sequence
Representative Public ID AV177839 NCBI
Target Description AV177839_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK154.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV177839 /WB_GENE_ID=ZK154.6 /WP=CE28178 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk534e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029816 NCBI Caenorhabditis elegans ZK154.6a (ZK154.6) mRNA, complete cds. 11/11 None
ZK154.6a ENSEMBL cdna:known chromosome:CEL140:X:7790135:7793484:-1 gene:ZK154.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181040 2 1 NM_001029816 173706_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7790194-7792197(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK154.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09096 Hypothetical protein ZK154.6a [Caenorhabditis elegans] ref|NP_001024987.1| ZK154.6a [Caenorhabditis elegans] 4.0E-73
blast CAE70277 Hypothetical protein CBG16791 [Caenorhabditis briggsae] 1.0E-52
blast AAQ91891 Hypothetical protein ZK154.6b [Caenorhabditis elegans] ref|NP_001024988.1| ZK154.6b [Caenorhabditis elegans] 3.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024987.1 2 5-22,86-108
ZK154.6a 2 5-22,86-108
Sequence
Target Sequence 
>C. ELEGANS:173706_AT
gtttgaaaagcatctgaacttgagtaattgctagtaatattatttcacattaatttggca
taactcttcccacaactttgtgttttttctggtgttcttccagtacaacttacatcataa
tcatgatttcagttgtaaagctcaatttttaccaccaaacacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGAAAAGCATCTGAACTTGAGT 387 449 626 Antisense
ATCTGAACTTGAGTAATTGCTAGTA 340 33 637 Antisense
ATTGCTAGTAATATTATTTCACATT 189 5 652 Antisense
ATTTCACATTAATTTGGCATAACTC 591 15 667 Antisense
TTTGGCATAACTCTTCCCACAACTT 365 663 679 Antisense
CACAACTTTGTGTTTTTTCTGGTGT 328 195 696 Antisense
TTGTGTTTTTTCTGGTGTTCTTCCA 578 707 703 Antisense
GTGTTCTTCCAGTACAACTTACATC 633 483 717 Antisense
TCCAGTACAACTTACATCATAATCA 547 589 724 Antisense
TCATGATTTCAGTTGTAAAGCTCAA 358 621 746 Antisense
GCTCAATTTTTACCACCAAACACGC 496 299 765 Antisense
Sequence Source Affymetrix Proprietary Database