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[173705_s_at]

Description AU114953_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K06A1.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114953 /WB_GENE_ID=K06A1.5 /WP=CE02005 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk724a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 43      6grp_total > 60      4grp_total > 12      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1182
1 2 3 4 range
A 924.2
(-0.9)
P 		616
(-2.5)
P 		532.1
(-3)
P 		1632.4
(3)
P 		1100
B 949.7
(-0.4)
P 		611.2
(-2.2)
P 		450.4
(-3)
P 		1587.7
(3)
P 		1137
C 956.6
(-0.7)
P 		568.4
(-2.9)
P 		551.3
(-3)
P 		1620.6
(3)
P 		1069
avr 943.5
(-0.6) 		598.5
(-2.5) 		511.3
(-3) 		1613.6
(3) 		1102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 736
1 2 3 4 5 6 range
A 1084.3
(0.7)
P 		867.2
(-1.5)
P 		1293.3
(2.9)
P 		1307.2
(3)
P 		880.3
(-1.3)
P 		717.6
(-3)
P 		590
B 1030.3
(0.3)
P 		1138.3
(2)
P 		1201.6
(3)
P 		1185.2
(2.7)
P 		924.3
(-1.4)
P 		821.6
(-3)
P 		380
C 779.3
(-3)
P 		1175
(0.5)
P 		1026.7
(-0.8)
P 		1453.4
(3)
P 		794.5
(-2.9)
P 		801.3
(-2.8)
P 		674
avr 964.6
(-0.9) 		1060.2
(0.1) 		1173.9
(1.4) 		1315.3
(3) 		866.4
(-2) 		780.2
(-3) 		535
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 336.5
(3)
P 		133.7
(-3)
P 		139.1
(-2.8)
P 		238.9
(0.1)
P 		203
B 302.8
(2.1)
P 		150.9
(-1.8)
P 		104.4
(-3)
P 		338.3
(3)
P 		234
C 316.7
(3)
P 		163.4
(-3)
P 		192.2
(-1.9)
P 		273.3
(1.3)
P 		153
avr 318.7
(3) 		149.3
(-2.9) 		145.2
(-3) 		283.5
(1.8) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 199.9
(-2)
P 		308.4
(2.1)
P 		281.7
(1.1)
P 		331.5
(3)
P 		265.6
(0.5)
P 		174.7
(-3)
P 		157
B 358.5
(1.6)
P 		378.9
(3)
P 		291.8
(-3)
P 		313.9
(-1.5)
P 		375.5
(2.8)
P 		306.4
(-2)
P 		87
C 288.8
(-1.1)
P 		358.5
(3)
P 		261.3
(-2.8)
P 		292.3
(-0.9)
P 		257.1
(-3)
P 		268.2
(-2.3)
P 		101
avr 282.4
(-1) 		348.6
(3) 		278.3
(-1.3) 		312.6
(0.8) 		299.4
(0) 		249.8
(-3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173705_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23764
Sequence Type Exemplar sequence
Representative Public ID AU114953 NCBI
Target Description AU114953_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K06A1.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114953 /WB_GENE_ID=K06A1.5 /WP=CE02005 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk724a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062898 NCBI Caenorhabditis elegans K06A1.5 (K06A1.5) mRNA, complete cds. 11/11 None
SNAP00000007666 ENSEMBL cdna:SNAP chromosome:CEL140:II:6451668:6453335:-1 9/11 None
GENEFINDER00000007674 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6450414:6453335:-1 9/11 None
K06A1.5.1 ENSEMBL cdna:known chromosome:CEL140:II:6450977:6453338:-1 gene:K06A1.5 11/11 None
K06A1.5.2 ENSEMBL cdna:known chromosome:CEL140:II:6450986:6453345:-1 gene:K06A1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6451107-6453123(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A1.5
Entrez Gene 174067 Entrez gene
SwissProt Q09406 EMBL-EBI
WormBase CE02005 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24299 Hypothetical protein K06A1.5 [Caenorhabditis elegans] ref|NP_495299.1| K06A1.5 [Caenorhabditis elegans] sp|Q09406|YRG5_CAEEL Hypothetical WD-repeat protein K06A1.5 in chromosome II 0.0
blast CAE59321 Hypothetical protein CBG02663 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.0E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.39
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.22
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.089
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.0E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.39
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.22
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.089
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.0E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.39
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.22
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.089
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0021
Sequence
Target Sequence 
>C. ELEGANS:173705_S_AT
gagtacgttttctggccatacggataaggtttcatctgcaagattattccagtcacacaa
tgtcatatctggatctgcggatcgtacaatcaagaattgggatatcagtagtattcgttg
tctcaaatcatatcttgttggatccacagtatttgatattgttgctaaatgtggtgtttc
tcaatccagcttcatttcttcccattttgataaaaaggttcggttctgggatgcacgctc
ttcagatgcaacgtattcagtagaactcggacaaaaagtcagctctcttgatatctcgat
ggatggtcttcaagttcttgcttcatcacgagatgatacactttccttgatcgatgttcg
caactatggaattattcatctctactcagcagaacagtataaaactagctgtgatagtac
gagagcaatcttttcatctacgggagaatatgtgctggctggatcttcgaattcgtctgt
tttcatttggaatacaaaaaccacaaagttggaaaaagttgtgaaaactgcgagatcagg
ttcggctcaaataatgtctctggcatggaatccgtcaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTACGTTTTCTGGCCATACGGAT 472 397 778 Antisense
TGTGGTGTTTCTCAATCCAGCTTCA 285 555 947 Antisense
AAAGGTTCGGTTCTGGGATGCACGC 434 119 991 Antisense
GGATGCACGCTCTTCAGATGCAACG 270 513 1006 Antisense
AAGTCAGCTCTCTTGATATCTCGAT 382 157 1053 Antisense
TCAAGTTCTTGCTTCATCACGAGAT 122 633 1087 Antisense
GATACACTTTCCTTGATCGATGTTC 564 423 1112 Antisense
GAGAGCAATCTTTTCATCTACGGGA 616 393 1198 Antisense
CTGGCTGGATCTTCGAATTCGTCTG 623 241 1232 Antisense
TTCGGCTCAAATAATGTCTCTGGCA 673 693 1318 Antisense
GTCTCTGGCATGGAATCCGTCAGGC 68 471 1333 Antisense
Sequence Source Affymetrix Proprietary Database