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[173704_s_at] thiol protease

Description CEC6043_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W07B8.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10604 /WB_GENE_ID=W07B8.4 /WP=CE14680 /CHR=5 /FEA=Genomic Cluster /DEF=thiol protease; C.elegans cDNA clone yk150b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      6grp_highest_nonorm > 63      6grp_total > 93      4grp_total > 02      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 89.1
(-1.3)
A 		49
(-3)
A 		76.7
(-1.8)
P 		192.2
(3)
P 		143
B 59.4
(-3)
A 		62.4
(-2.9)
A 		77.9
(-2.2)
P 		201.5
(3)
P 		142
C 88
(-2.2)
P 		71.7
(-2.8)
A 		66.5
(-3)
M 		221
(3)
P 		155
avr 78.8
(-2.3) 		61
(-3) 		73.7
(-2.5) 		204.9
(3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1292
1 2 3 4 5 6 range
A 136.2
(-3)
P 		165.8
(-2.8)
P 		333.4
(-1.9)
P 		962.4
(1.7)
P 		1182
(3)
P 		378.1
(-1.6)
P 		1046
B 162
(-3)
P 		175.8
(-2.9)
P 		292.4
(-2.3)
P 		873.8
(1)
P 		1237.2
(3)
P 		379.4
(-1.8)
P 		1075
C 176
(-2.8)
P 		128
(-3)
P 		263.4
(-2.4)
P 		817.2
(0.2)
P 		1419.5
(3)
P 		416.5
(-1.7)
P 		1292
avr 158.1
(-3) 		156.5
(-3) 		296.4
(-2.3) 		884.5
(0.9) 		1279.6
(3) 		391.3
(-1.7) 		1123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 32.4
(3)
A 		10.6
(-3)
A 		20.1
(-0.4)
P 		28.1
(1.8)
P 		22
B 19
(-2.2)
A 		15.4
(-3)
A 		18.1
(-2.4)
P 		42.9
(3)
P 		28
C 29.1
(0.1)
P 		20.6
(-3)
A 		23.2
(-2.1)
M 		37.3
(3)
P 		17
avr 26.8
(0.3) 		15.5
(-3) 		20.5
(-1.5) 		36.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 25.1
(-3)
P 		59
(-2.4)
P 		72.6
(-2.1)
P 		244.1
(1)
P 		356.7
(3)
P 		92.1
(-1.8)
P 		332
B 56.4
(-3)
P 		58.5
(-3)
P 		71
(-2.8)
P 		231.4
(-0.6)
P 		502.7
(3)
P 		141.5
(-1.9)
P 		446
C 65.2
(-2.6)
P 		39.1
(-3)
P 		67
(-2.6)
P 		164.3
(-1.2)
P 		459.3
(3)
P 		139.4
(-1.6)
P 		420
avr 48.9
(-3) 		52.2
(-2.9) 		70.2
(-2.7) 		213.3
(-0.5) 		439.6
(3) 		124.3
(-1.8) 		391
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173704_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25647
Sequence Type Exemplar sequence
Representative Public ID CEC6043 NCBI
Target Description CEC6043_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W07B8.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10604 /WB_GENE_ID=W07B8.4 /WP=CE14680 /CHR=5 /FEA=Genomic Cluster /DEF=thiol protease; C.elegans cDNA clone yk150b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070981 NCBI Caenorhabditis elegans W07B8.4 (W07B8.4) mRNA, complete cds. 11/11 None
SNAP00000016192 ENSEMBL cdna:SNAP chromosome:CEL140:V:1128794:1131729:-1 10/11 None
GENEFINDER00000016195 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1130009:1131729:-1 11/11 None
W07B8.4 ENSEMBL cdna:known chromosome:CEL140:V:1129918:1131729:-1 gene:W07B8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1129928-1131730(-) 100.0 100.0
Public Domain and Genome References
Gene Title thiol protease
Ensembl W07B8.4
Entrez Gene 178611 Entrez gene
SwissProt O16288 EMBL-EBI
WormBase CE14680 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65345 Hypothetical protein W07B8.4 [Caenorhabditis elegans] ref|NP_503382.1| W07B8.4 [Caenorhabditis elegans] 0.0
blast CAE58029 Hypothetical protein CBG01103 [Caenorhabditis briggsae] 1.0E-141
blast AAB65346 Cysteine protease related protein 5 [Caenorhabditis elegans] ref|NP_503383.1| Cysteine PRotease related family member (cpr-5) [Caenorhabditis elegans] sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5 precursor (Cysteine protease-related 5) gb|AAA98784.1| cathepsin B-like cysteine proteinase gb|AAA98786.1| cathepsin B-like cysteine proteinase [Caenorhabditis elegans] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 1.3E-118
Sequence
Target Sequence 
>C. ELEGANS:173704_S_AT
tcaccggaggatcctttgagtcgcaatatggatgcaagccatattcaattgctccatgcg
gcgaaactatcgacggagttacatggcctgagtgccctatgaaaatctctgatactccaa
agtgtgagcatcactgcactggaaacaactcctacccgattccatatgaccaggataagc
attttggcgcaagtgcatatgcaattggtcggagcgcgaagcaaattcaaaccgaaattc
tggctcacggaccagtagaagtcggattcattgtctacgaggacttctacctatacaaaa
ccgggatctacacacatgtcgctggaggagaacttggtgggcatgcagtgaagatgcttg
gctggggagtcgacaatggtacaccgtattggctcgcggccaactcctggaatacagtgt
ggggcgagaaaggctacttcaggattttgagaggggtcgatgaatgtggtatcgagagtg
ctgcggtcgccgggatgccggacttgaatcgacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCGGAGGATCCTTTGAGTCGCA 596 625 501 Antisense
AATTGCTCCATGCGGCGAAACTATC 550 177 547 Antisense
GTTACATGGCCTGAGTGCCCTATGA 707 445 578 Antisense
GAGCATCACTGCACTGGAAACAACT 596 387 626 Antisense
TCCTACCCGATTCCATATGACCAGG 65 593 650 Antisense
GATCTACACACATGTCGCTGGAGGA 672 419 805 Antisense
GAAGATGCTTGGCTGGGGAGTCGAC 642 337 850 Antisense
AATGGTACACCGTATTGGCTCGCGG 665 161 875 Antisense
GCGGCCAACTCCTGGAATACAGTGT 630 287 896 Antisense
TGGTATCGAGAGTGCTGCGGTCGCC 595 549 967 Antisense
CGGGATGCCGGACTTGAATCGACGT 269 245 991 Antisense
Sequence Source Affymetrix Proprietary Database