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[173702_at] Yeast YKK0 like

Description C43556 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T05E11.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43556 /WB_GENE_ID=T05E11.5 /WP=CE06364 /CHR=4 /FEA=Genomic Cluster /DEF=Yeast YKK0 like; C.elegans cDNA clone yk329g12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 18      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 03      6grp_total > 28      4grp_total > 56      6grp_highest_sub > Cu      6grp_cgc > 03      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2027
1 2 3 4 range
A 2763
(-2.9)
P 		2787.2
(-2.7)
P 		3665.1
(3)
P 		2746.2
(-3)
P 		919
B 2959.8
(-1.6)
P 		3422.4
(-0.2)
P 		4499.4
(3)
P 		2472
(-3)
P 		2027
C 2673.6
(-3)
P 		3683.6
(1)
P 		4171.4
(3)
P 		2708.2
(-2.9)
P 		1498
avr 2798.8
(-2.4) 		3297.7
(-0.3) 		4112
(3) 		2642.1
(-3) 		1470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3437
1 2 3 4 5 6 range
A 4364.7
(3)
P 		2957
(-0.7)
P 		3046.3
(-0.4)
P 		2229.7
(-2.6)
P 		2979.3
(-0.6)
P 		2062.6
(-3)
P 		2302
B 4070.8
(3)
P 		2933.5
(0.8)
P 		927.7
(-3)
P 		3203.8
(1.3)
P 		2699.1
(0.4)
P 		2319.6
(-0.3)
P 		3143
C 3192
(3)
P 		3103.3
(2.7)
P 		1989.5
(-0.4)
P 		1092.1
(-3)
P 		2566.1
(1.2)
P 		2814.4
(1.9)
P 		2100
avr 3875.8
(3) 		2997.9
(0.2) 		1987.8
(-3) 		2175.2
(-2.4) 		2748.2
(-0.6) 		2398.9
(-1.7) 		1888
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1052
1 2 3 4 range
A 1006
(3)
P 		605
(-1)
P 		958.1
(2.5)
P 		402
(-3)
P 		604
B 943.9
(1.9)
P 		845.2
(0.7)
P 		1042.6
(3)
P 		526.8
(-3)
P 		516
C 885
(-0.4)
P 		1059
(0.6)
P 		1453.9
(3)
P 		456.6
(-3)
P 		997
avr 945
(1.2) 		836.4
(0.3) 		1151.5
(3) 		461.8
(-3) 		690

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1197
1 2 3 4 5 6 range
A 804.6
(0.3)
P 		1051.7
(3)
P 		663.4
(-1.2)
P 		565.5
(-2.3)
P 		899
(1.3)
P 		502.2
(-3)
P 		550
B 1416.5
(3)
P 		976.5
(0.8)
P 		225.3
(-3)
P 		848.6
(0.1)
P 		1096.6
(1.4)
P 		865
(0.2)
P 		1191
C 1183.2
(3)
P 		946.9
(1.5)
P 		506.4
(-1.2)
P 		219.6
(-3)
P 		830.4
(0.8)
P 		942.1
(1.5)
P 		964
avr 1134.8
(3) 		991.7
(1.7) 		465
(-3) 		544.6
(-2.3) 		942
(1.3) 		769.8
(-0.3) 		670
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24482
Sequence Type Exemplar sequence
Representative Public ID C43556 NCBI
Target Description C43556 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T05E11.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43556 /WB_GENE_ID=T05E11.5 /WP=CE06364 /CHR=4 /FEA=Genomic Cluster /DEF=Yeast YKK0 like; C.elegans cDNA clone yk329g12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069678 NCBI Caenorhabditis elegans IntraMembrane Protease (IMPAS) family member (imp-2) (imp-2) mRNA, complete cds. 11/11 None
T05E11.5 ENSEMBL cdna:known chromosome:CEL140:IV:11116722:11118859:-1 gene:T05E11.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11116790-11118842(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YKK0 like
Gene Symbol imp-2
Ensembl T05E11.5
Entrez Gene 178013 Entrez gene
SwissProt P49049 EMBL-EBI
WormBase CE06364 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8717 D-alanyl-D-alanine endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92975 Hypothetical protein T05E11.5 [Caenorhabditis elegans] ref|NP_502079.1| IntraMembrane Protease (IMPAS) family member (imp-2) [Caenorhabditis elegans] sp|P49049|YJ95_CAEEL Hypothetical protein T05E11.5 in chromosome IV 0.0
blast CAE62005 Hypothetical protein CBG06013 [Caenorhabditis briggsae] 0.0
blast AAF51486 CG11840-PA [Drosophila melanogaster] ref|NP_523444.1| CG11840-PA [Drosophila melanogaster] gb|AAL48184.1| SD07518p [Drosophila melanogaster] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR007369 EMBL-EBI Peptidase A22B, minor histocompatibility antigen H13 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502079.1 7 24-46,175-197,248-265,289-311,348-367,387-409,414-436
T05E11.5 7 24-46,175-197,248-265,289-311,348-367,387-409,414-436
Sequence
Target Sequence 
>C. ELEGANS:173702_AT
tagtctaaagtatgctattcctgcttgttattctgttttcgaagaatacttgaattggaa
aacctaacttatcgtacttttgactatttctagatattctagtcatttaattcaactcga
ttccatgtcccaccacatcctagcataatcattctgattcctgtcctttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTCTAAAGTATGCTATTCCTGCT 415 653 1432 Antisense
AAGTATGCTATTCCTGCTTGTTATT 551 157 1439 Antisense
TATTCCTGCTTGTTATTCTGTTTTC 385 665 1447 Antisense
CCTGCTTGTTATTCTGTTTTCGAAG 340 267 1451 Antisense
TGAATTGGAAAACCTAACTTATCGT 438 573 1482 Antisense
CTTATCGTACTTTTGACTATTTCTA 670 221 1499 Antisense
ACTTTTGACTATTTCTAGATATTCT 450 101 1507 Antisense
AGATATTCTAGTCATTTAATTCAAC 409 63 1523 Antisense
TTAATTCAACTCGATTCCATGTCCC 540 683 1538 Antisense
CCACCACATCCTAGCATAATCATTC 339 273 1561 Antisense
TAATCATTCTGATTCCTGTCCTTTC 269 635 1577 Antisense
Sequence Source Affymetrix Proprietary Database