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[173701_s_at]

Description AV177283_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T03D3.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV177283 /WB_GENE_ID=T03D3.5 /WP=CE13076 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk526g7 : 3prime end, single read.
Cluster 6grp_total > 53      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 58.7
(-0.8)
A 		6.9
(-3)
A 		81.8
(0.2)
A 		145.5
(3)
M 		139
B 69.2
(3)
A 		35.2
(-1.5)
A 		23.6
(-3)
A 		59.4
(1.7)
A 		46
C 58.5
(-0.4)
A 		68.1
(1.7)
A 		46.6
(-3)
A 		74.1
(3)
A 		28
avr 62.1
(-0.3) 		36.7
(-3) 		50.7
(-1.5) 		93
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 89.3
(-0.7)
A 		70.5
(-2.3)
A 		91.6
(-0.5)
A 		61.8
(-3)
A 		62.3
(-3)
A 		134.5
(3)
P 		73
B 86.1
(-0.2)
A 		63
(-2.6)
A 		108.5
(2.3)
A 		80
(-0.8)
A 		115.3
(3)
P 		59.7
(-3)
A 		56
C 88.8
(3)
A 		66.7
(-0.9)
A 		78.3
(1.1)
A 		84.1
(2.2)
A 		87.5
(2.8)
M 		55.1
(-3)
A 		34
avr 88.1
(1.9) 		66.7
(-3) 		92.8
(3) 		75.3
(-1) 		88.4
(2) 		83.1
(0.8) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21.4
(3)
A 		1.5
(-3)
A 		21.4
(3)
A 		21.3
(3)
M 		20
B 22.1
(3)
A 		8.7
(-1.8)
A 		5.5
(-3)
A 		12.7
(-0.4)
A 		17
C 19.4
(2.8)
A 		19.6
(3)
A 		16.2
(0.1)
A 		12.5
(-3)
A 		7
avr 21
(3) 		9.9
(-3) 		14.4
(-0.6) 		15.5
(0) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 16.5
(-2.7)
A 		25.1
(0.3)
A 		20
(-1.5)
A 		15.7
(-3)
A 		18.8
(-1.9)
A 		32.7
(3)
P 		17
B 30
(-0.9)
A 		21
(-3)
A 		26.3
(-1.8)
A 		21.2
(-3)
A 		46.8
(3)
P 		22.3
(-2.7)
A 		26
C 32.9
(3)
A 		20.4
(-1.7)
A 		19.9
(-1.9)
A 		16.9
(-3)
A 		28.3
(1.3)
M 		18.5
(-2.4)
A 		16
avr 26.5
(0.9) 		22.2
(-1.1) 		22.1
(-1.1) 		17.9
(-3) 		31.3
(3) 		24.5
(-0) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173701_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25651
Sequence Type Exemplar sequence
Representative Public ID AV177283 NCBI
Target Description AV177283_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T03D3.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV177283 /WB_GENE_ID=T03D3.5 /WP=CE13076 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk526g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071364 NCBI Caenorhabditis elegans T03D3.5 (T03D3.5) mRNA, complete cds. 11/11 None
SNAP00000008135 ENSEMBL cdna:SNAP chromosome:CEL140:V:2823933:2826647:-1 11/11 None
GENEFINDER00000008145 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2823933:2826647:-1 11/11 None
T03D3.5 ENSEMBL cdna:known chromosome:CEL140:V:2823659:2826653:-1 gene:T03D3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2823704-2826559(-) 95.72 100.0
Public Domain and Genome References
Gene Title
Ensembl T03D3.5
Entrez Gene 178743 Entrez gene
SwissProt O16979 EMBL-EBI
WormBase CE33823 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503765 T03D3.5 [Caenorhabditis elegans] gb|AAG24188.3| Hypothetical protein T03D3.5 [Caenorhabditis elegans] 0.0
blast T32207 hypothetical protein T03D3.5 - Caenorhabditis elegans 1.0E-178
blast NP_503765 T03D3.5 [Caenorhabditis elegans] gb|AAG24188.3| Hypothetical protein T03D3.5 [Caenorhabditis elegans] 1.0E-166
blast T32207 hypothetical protein T03D3.5 - Caenorhabditis elegans 1.0E-155
blast AAD14770 Hypothetical protein H25P19.1 [Caenorhabditis elegans] ref|NP_503295.2| H25P19.1 [Caenorhabditis elegans] 5.0E-48
Sequence
Target Sequence 
>C. ELEGANS:173701_S_AT
cggcgagtccagcgttgaacaataatattgaaacaaaatcggaagatccttctccagaaa
attcaaaaatctcgacccaaatgttcactgattggaaatatcagcttcttccgatcaatg
agggctcagcgatcaaacaattccgactagtggttccgaagaactttccatcgccgagca
actctgaagctaaaccgccaaggaaagtctacaaaaagcgatcaatcgaggagctgcgag
gcggtgaaaagaaggactatccggaaagagttcgcaagccacgtgttccttttgaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCGAGTCCAGCGTTGAACAATAA 38 243 840 Antisense
GGAAGATCCTTCTCCAGAAAATTCA 176 531 880 Antisense
AAATCTCGACCCAAATGTTCACTGA 251 117 906 Antisense
GCTTCTTCCGATCAATGAGGGCTCA 44 305 943 Antisense
GGCTCAGCGATCAAACAATTCCGAC 225 539 962 Antisense
CAATTCCGACTAGTGGTTCCGAAGA 589 177 977 Antisense
TTCCGAAGAACTTTCCATCGCCGAG 650 695 993 Antisense
GCAACTCTGAAGCTAAACCGCCAAG 158 319 1017 Antisense
CAATCGAGGAGCTGCGAGGCGGTGA 618 179 1062 Antisense
GAAAGAGTTCGCAAGCCACGTGTTC 624 359 1103 Antisense
CAAGCCACGTGTTCCTTTTGAATAA 710 183 1114 Antisense
Sequence Source Affymetrix Proprietary Database