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[173700_at]

Description AV177283_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T03D3.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV177283 /WB_GENE_ID=T03D3.5 /WP=CE13076 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk526g7 : 3prime end, single read.
Cluster 6grp_total > 42      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 25.3
(2.4)
A 		22.8
(1.6)
A 		7.8
(-3)
A 		27.3
(3)
A 		20
B 22
(3)
A 		9.4
(-3)
A 		11
(-2.2)
A 		15.4
(-0.1)
A 		13
C 47.9
(1.1)
A 		11
(-2.3)
A 		3.5
(-3)
A 		67.8
(3)
A 		64
avr 31.7
(2) 		14.4
(-1.6) 		7.4
(-3) 		36.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 59.2
(3)
A 		6.3
(-3)
A 		31.2
(-0.2)
A 		12
(-2.4)
A 		32
(-0.1)
A 		36.8
(0.5)
A 		53
B 51.8
(1.5)
A 		47.9
(1)
A 		55.1
(1.8)
A 		66.1
(3)
A 		40.4
(0.2)
A 		10.2
(-3)
A 		56
C 9.1
(-3)
A 		24.6
(-0.7)
A 		49.4
(3)
A 		23.6
(-0.8)
A 		9.7
(-2.9)
A 		11.7
(-2.6)
A 		40
avr 40
(1.8) 		26.3
(-1.4) 		45.2
(3) 		33.9
(0.4) 		27.4
(-1.2) 		19.6
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.2
(3)
A 		4.9
(-0.6)
A 		2
(-3)
A 		4
(-1.3)
A 		7
B 7
(3)
A 		2.3
(-3)
A 		2.6
(-2.6)
A 		3.3
(-1.7)
A 		5
C 15.9
(3)
A 		3.2
(-2.2)
A 		1.2
(-3)
A 		11.4
(1.2)
A 		15
avr 10.7
(3) 		3.5
(-1.9) 		1.9
(-3) 		6.2
(-0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.9
(3)
A 		2.2
(-3)
A 		6.8
(0.2)
A 		3.1
(-2.4)
A 		9.7
(2.2)
A 		9
(1.7)
A 		9
B 18
(3)
A 		15.9
(2.1)
A 		13.4
(1.1)
A 		17.5
(2.8)
A 		16.4
(2.3)
A 		3.8
(-3)
A 		14
C 3.4
(-2.8)
A 		7.5
(-0.2)
A 		12.6
(3)
A 		4.7
(-2)
A 		3.1
(-3)
A 		3.9
(-2.5)
A 		10
avr 10.8
(2.9) 		8.5
(0.3) 		10.9
(3) 		8.4
(0.2) 		9.7
(1.6) 		5.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173700_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25651
Sequence Type Exemplar sequence
Representative Public ID AV177283 NCBI
Target Description AV177283_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T03D3.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV177283 /WB_GENE_ID=T03D3.5 /WP=CE13076 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk526g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071364 NCBI Caenorhabditis elegans T03D3.5 (T03D3.5) mRNA, complete cds. 11/11 None
T03D3.5 ENSEMBL cdna:known chromosome:CEL140:V:2823659:2826653:-1 gene:T03D3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2823704-2826559(-) 95.72 100.0
Public Domain and Genome References
Gene Title
Ensembl T03D3.5
Entrez Gene 178743 Entrez gene
SwissProt O16979 EMBL-EBI
WormBase CE33823 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503765 T03D3.5 [Caenorhabditis elegans] gb|AAG24188.3| Hypothetical protein T03D3.5 [Caenorhabditis elegans] 0.0
blast T32207 hypothetical protein T03D3.5 - Caenorhabditis elegans 1.0E-155
blast AAD14770 Hypothetical protein H25P19.1 [Caenorhabditis elegans] ref|NP_503295.2| H25P19.1 [Caenorhabditis elegans] 5.0E-48
Sequence
Target Sequence 
>C. ELEGANS:173700_AT
ttccttttgaataatccctaaatctttgattgtttttttaattaatgctcaaattttgtc
taaaaattttactgggtcccccttctacaaacaggatatttttgttttttgccagtttcc
gttctttctccatttctgtgttctatttttctcccgtgctggtctaaattattctataat
tttgatgtacttctgcctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTTTTGAATAATCCCTAAATCT 284 695 1125 Antisense
AATAATCCCTAAATCTTTGATTGTT 36 173 1134 Antisense
TTGTTTTTTTAATTAATGCTCAAAT 54 707 1154 Antisense
ATTAATGCTCAAATTTTGTCTAAAA 172 13 1165 Antisense
GGTCCCCCTTCTACAAACAGGATAT 72 501 1199 Antisense
CTTTCTCCATTTCTGTGTTCTATTT 181 223 1248 Antisense
CCATTTCTGTGTTCTATTTTTCTCC 690 269 1254 Antisense
TTCTCCCGTGCTGGTCTAAATTATT 417 693 1273 Antisense
TCCCGTGCTGGTCTAAATTATTCTA 596 597 1276 Antisense
GTGCTGGTCTAAATTATTCTATAAT 38 479 1280 Antisense
TAATTTTGATGTACTTCTGCCTCTC 367 635 1301 Antisense
Sequence Source Affymetrix Proprietary Database