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[173699_s_at]

Description AV201759 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C09G9.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV201759 /WB_GENE_ID=C09G9.1 /WP=CE03000 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk541b7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 32      6grp_total > 82      4grp_total > 54      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 973
1 2 3 4 range
A 1450.5
(3)
P 		944.6
(-0.2)
P 		844.1
(-0.8)
P 		490.8
(-3)
P 		960
B 1370.6
(3)
P 		908.3
(-0.2)
P 		699.4
(-1.7)
P 		514.4
(-3)
P 		856
C 1430
(3)
P 		949
(-0)
P 		791.1
(-1)
P 		477.3
(-3)
P 		953
avr 1417
(3) 		934
(-0.1) 		778.2
(-1.2) 		494.2
(-3) 		923

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 686
1 2 3 4 5 6 range
A 1157.3
(0.4)
P 		1278.7
(1.5)
P 		1258.1
(1.3)
P 		1183.1
(0.6)
P 		1437.2
(3)
P 		789.2
(-3)
P 		648
B 1146.3
(0.4)
P 		1360
(2.3)
P 		1376.6
(2.5)
P 		1435.1
(3)
P 		1303.4
(1.8)
P 		777.9
(-3)
P 		657
C 1118.4
(-0.2)
P 		1319
(1.7)
P 		1464.1
(3)
P 		1334.9
(1.8)
P 		1427
(2.7)
P 		810.6
(-3)
P 		654
avr 1140.7
(0.5) 		1319.2
(2.3) 		1366.3
(2.8) 		1317.7
(2.3) 		1389.2
(3) 		792.6
(-3) 		597
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 456
1 2 3 4 range
A 528.1
(3)
P 		205.1
(-1.2)
P 		220.7
(-1)
P 		71.8
(-3)
P 		456
B 437.1
(3)
P 		224.3
(-0.9)
P 		162.1
(-2)
P 		109.6
(-3)
P 		328
C 473.4
(3)
P 		272.9
(-0.1)
P 		275.7
(-0)
P 		80.5
(-3)
P 		393
avr 479.5
(3) 		234.1
(-0.8) 		219.5
(-1) 		87.3
(-3) 		392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 213.3
(-2.5)
P 		454.8
(3)
P 		274
(-1.1)
P 		300.1
(-0.5)
P 		433.7
(2.5)
P 		192.1
(-3)
P 		263
B 398.9
(-0.3)
P 		452.7
(1.1)
P 		334.3
(-1.9)
P 		380.1
(-0.7)
P 		529.6
(3)
P 		290.1
(-3)
P 		240
C 414.6
(1.5)
P 		402.5
(1.2)
P 		372.6
(0.2)
P 		268.4
(-3)
P 		461.8
(3)
P 		271.3
(-2.9)
P 		193
avr 342.3
(-0.6) 		436.7
(2) 		327
(-1) 		316.2
(-1.3) 		475
(3) 		251.2
(-3) 		224
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173699_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24626
Sequence Type Exemplar sequence
Representative Public ID AV201759 NCBI
Target Description AV201759 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C09G9.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV201759 /WB_GENE_ID=C09G9.1 /WP=CE03000 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk541b7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069135 NCBI Caenorhabditis elegans C09G9.1 (C09G9.1) mRNA, complete cds. 11/11 None
SNAP00000008786 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8862750:8865028:-1 11/11 None
GENEFINDER00000008800 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8862407:8865028:-1 9/11 None
C09G9.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:8862593:8865465:-1 gene:C09G9.1 11/11 None
C09G9.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:8862599:8865467:-1 gene:C09G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8862669-8865035(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G9.1
Entrez Gene 177702 Entrez gene
SwissProt Q17871 EMBL-EBI
WormBase CE03000 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90971 Hypothetical protein C09G9.1 [Caenorhabditis elegans] ref|NP_501536.1| C09G9.1 [Caenorhabditis elegans] 0.0
blast CAE56516 Hypothetical protein CBG24238 [Caenorhabditis briggsae] 1.0E-117
blast CAE56516 Hypothetical protein CBG24238 [Caenorhabditis briggsae] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:173699_S_AT
ctttcatgccaatgacaccttctgccacagaacattcatcgtcagaatttgggcaagatt
tggaagatgctggagatagacatgaaaattatcggtaccttcactcatatgcattgaata
atttgaatcatagtcgcccgaagaaggaaacgattttaagaaggactacgatgaatcaga
aaaatcagttggccacaccacagaagcaattgagacgatcttcggaaacaatggctccca
tgtgcttcgtgactcctgaaccatcgtggaaagagctggatgttggagtttatacaccac
cgccgtcaagaatggattttacaccacaagcctcgaaaaaattgacgaagtcttcaaaat
ctgtgaaaataattcaaaagaagtcccgccgaatcccgaacgagaaggatgatttcgatc
gatttttagacgcagttcagtggcacgcccctttaattcttgtaccagttgcatttggat
gttggataactggcagtgtgccaattttgagcccaactttacgatttatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCATGCCAATGACACCTTCTGC 255 221 726 Antisense
TTCTGCCACAGAACATTCATCGTCA 483 693 745 Antisense
AATTATCGGTACCTTCACTCATATG 659 175 812 Antisense
ATCAGTTGGCCACACCACAGAAGCA 445 29 909 Antisense
AAACAATGGCTCCCATGTGCTTCGT 586 129 951 Antisense
GTGACTCCTGAACCATCGTGGAAAG 320 477 974 Antisense
ATACACCACCGCCGTCAAGAATGGA 56 25 1017 Antisense
TGGATTTTACACCACAAGCCTCGAA 152 551 1038 Antisense
TTTAGACGCAGTTCAGTGGCACGCC 280 669 1150 Antisense
GCAGTGTGCCAATTTTGAGCCCAAC 647 311 1218 Antisense
TGAGCCCAACTTTACGATTTATTTT 535 567 1233 Antisense
Sequence Source Affymetrix Proprietary Database