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[173697_s_at]

Description AU109771 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F10E9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109771 /WB_GENE_ID=F10E9.7 /WP=CE24894 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711a12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_high_8_8 > 14      6grp_highest_nonorm > 93      6grp_total > 98      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 529
1 2 3 4 range
A 89.2
(-3)
P 		167.9
(-2.1)
P 		186.9
(-1.9)
M 		618.4
(3)
P 		529
B 223.6
(-1.5)
P 		133.1
(-3)
P 		223.2
(-1.5)
P 		497.7
(3)
P 		365
C 151
(-3)
P 		191.4
(-2.2)
P 		182.9
(-2.4)
P 		464.6
(3)
P 		314
avr 154.6
(-3) 		164.1
(-2.8) 		197.7
(-2.3) 		526.9
(3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 928
1 2 3 4 5 6 range
A 210.5
(-2.7)
P 		172.1
(-3)
P 		283
(-2)
P 		333.6
(-1.5)
P 		800.9
(2.7)
P 		833.5
(3)
P 		661
B 120.6
(-3)
P 		245.1
(-2.2)
P 		235.5
(-2.3)
P 		359.2
(-1.5)
P 		866.7
(1.8)
P 		1048.8
(3)
P 		928
C 258.6
(-2)
P 		267.4
(-1.9)
P 		143.4
(-3)
P 		362
(-1)
P 		578.3
(0.9)
P 		814.3
(3)
P 		671
avr 196.6
(-3) 		228.2
(-2.7) 		220.6
(-2.8) 		351.6
(-1.7) 		748.6
(1.7) 		898.9
(3) 		702
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 32.5
(-3)
P 		36.5
(-2.6)
P 		48.9
(-1.3)
M 		90.5
(3)
P 		58
B 71.3
(0.1)
P 		32.9
(-3)
P 		51.7
(-1.5)
P 		106.1
(3)
P 		73
C 50
(-3)
P 		55
(-1.9)
P 		63.8
(-0.1)
P 		78.3
(3)
P 		28
avr 51.3
(-1.8) 		41.5
(-3) 		54.8
(-1.4) 		91.6
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 38.8
(-3)
P 		61.2
(-2.3)
P 		61.6
(-2.3)
P 		84.6
(-1.6)
P 		241.7
(3)
P 		202.9
(1.9)
P 		203
B 42
(-3)
P 		81.6
(-2.3)
P 		57.2
(-2.7)
P 		95.1
(-2.1)
P 		352.1
(2.3)
P 		391.1
(3)
P 		349
C 95.8
(-1.5)
P 		81.6
(-1.9)
P 		36.5
(-3)
P 		72.8
(-2.1)
P 		187.1
(0.8)
P 		272.6
(3)
P 		236
avr 58.9
(-2.8) 		74.8
(-2.4) 		51.8
(-3) 		84.2
(-2.2) 		260.3
(2.3) 		288.9
(3) 		237
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173697_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24008
Sequence Type Exemplar sequence
Representative Public ID AU109771 NCBI
Target Description AU109771 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F10E9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109771 /WB_GENE_ID=F10E9.7 /WP=CE24894 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711a12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066422
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000040906 ENSEMBL cdna:SNAP chromosome:CEL140:III:8305755:8307337:-1 11/11 None
GENEFINDER00000040915 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8305755:8307337:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066422 6/11 Cross Hyb Matching Probes None
F10E9.7 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8305731-8307334(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28017 Hypothetical protein F10E9.7 [Caenorhabditis elegans] ref|NP_498823.1| F10E9.7 [Caenorhabditis elegans] sp|P34401|YLU7_CAEEL Hypothetical protein F10E9.7 in chromosome III 4.0E-73
blast AAA28017 Hypothetical protein F10E9.7 [Caenorhabditis elegans] ref|NP_498823.1| F10E9.7 [Caenorhabditis elegans] sp|P34401|YLU7_CAEEL Hypothetical protein F10E9.7 in chromosome III 6.0E-73
blast CAE70170 Hypothetical protein CBG16641 [Caenorhabditis briggsae] 3.0E-33
blast CAE70170 Hypothetical protein CBG16641 [Caenorhabditis briggsae] 5.0E-33
Sequence
Target Sequence 
>C. ELEGANS:173697_S_AT
gagtcgccgacagtgagatacgagttgccgagtgtttctgcagaggccaatttggaatca
aacctcggtccaaccggtaaacgactcgattatataacatggcatcaacatcacatgtat
atggcaagaatgctgagtgaaatgagtacagtaaaacgacccgatggatgctacatcgta
gatcaagaacactaccaaattgtgtctggatacgcaggagagcttcttccgtcaaattcc
aatgtatgcaactgtggaatatcagttgcacttcaaaaattggaaaataaatcccacaac
ggaatggattgtatcatatacacctcaagttttcccgattgtagtcactgtttggagaag
attttgaatttgaaaatatcgaaaatttggcactggaactcgccgacaacaacaaaagaa
ttaaaaattctcgagatgcttgaagccagttcgattcaatgtgaaaagtataccccaact
cgaacgatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCGCCGACAGTGAGATACGAGT 341 399 26 Antisense
GATACGAGTTGCCGAGTGTTTCTGC 157 425 42 Antisense
GTGTTTCTGCAGAGGCCAATTTGGA 646 483 57 Antisense
TTGGAATCAAACCTCGGTCCAACCG 210 685 77 Antisense
TCCAACCGGTAAACGACTCGATTAT 54 587 94 Antisense
GTAAAACGACCCGATGGATGCTACA 62 461 176 Antisense
GATACGCAGGAGAGCTTCTTCCGTC 39 423 234 Antisense
TCATATACACCTCAAGTTTTCCCGA 552 611 339 Antisense
GTTTTCCCGATTGTAGTCACTGTTT 127 447 354 Antisense
TTTGGCACTGGAACTCGCCGACAAC 5 667 411 Antisense
GTATACCCCAACTCGAACGATTTCT 49 369 493 Antisense
Sequence Source Affymetrix Proprietary Database