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[173695_s_at]

Description AV203725 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01H3.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203725 /WB_GENE_ID=T01H3.2 /WP=CE23938 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk580d11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 63      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 338.5
(3)
P 		234.9
(-2)
P 		269.3
(-0.4)
P 		214.7
(-3)
P 		124
B 286.4
(3)
P 		256.7
(0.7)
P 		209.1
(-3)
P 		243
(-0.4)
P 		77
C 345.1
(3)
P 		240.1
(-1.9)
P 		308.3
(1.3)
P 		215.6
(-3)
P 		130
avr 323.3
(3) 		243.9
(-1.8) 		262.2
(-0.7) 		224.4
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 282.2
(-1.7)
P 		396.1
(3)
P 		363.8
(1.7)
P 		373.7
(2.1)
P 		252
(-3)
P 		302.7
(-0.9)
P 		144
B 299.4
(-2.2)
P 		398.6
(3)
P 		391.7
(2.6)
P 		319.8
(-1.1)
P 		283.1
(-3)
P 		349.5
(0.4)
P 		116
C 329.9
(-1.4)
P 		378.6
(0.2)
P 		459.1
(3)
P 		385.5
(0.5)
P 		284.4
(-3)
P 		326.4
(-1.6)
P 		175
avr 303.8
(-1.6) 		391.1
(2.4) 		404.9
(3) 		359.7
(0.9) 		273.2
(-3) 		326.2
(-0.6) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 123.3
(3)
P 		51
(-1.7)
P 		70.4
(-0.5)
P 		31.4
(-3)
P 		92
B 91.3
(3)
P 		63.4
(-0.9)
P 		48.5
(-3)
P 		51.8
(-2.5)
P 		43
C 114.2
(3)
P 		69
(-0.5)
P 		107.5
(2.5)
P 		36.4
(-3)
P 		78
avr 109.6
(3) 		61.1
(-1.2) 		75.5
(0.1) 		39.9
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 52
(-3)
P 		140.9
(3)
P 		79.2
(-1.2)
P 		94.8
(-0.1)
P 		76.1
(-1.4)
P 		73.7
(-1.5)
P 		89
B 104.2
(-0.6)
P 		132.7
(3)
P 		95.1
(-1.7)
P 		84.7
(-3)
P 		115
(0.8)
P 		130.3
(2.7)
P 		48
C 122.3
(3)
P 		115.5
(2.1)
P 		116.9
(2.3)
P 		77.5
(-3)
P 		92
(-1.1)
P 		109.3
(1.3)
P 		45
avr 92.8
(-2) 		129.7
(3) 		97.1
(-1.4) 		85.7
(-3) 		94.4
(-1.8) 		104.4
(-0.4) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173695_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23581
Sequence Type Exemplar sequence
Representative Public ID AV203725 NCBI
Target Description AV203725 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01H3.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203725 /WB_GENE_ID=T01H3.2 /WP=CE23938 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk580d11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063257 NCBI Caenorhabditis elegans T01H3.2 (T01H3.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000018640 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7874224:7877909:-1 11/11 None
T01H3.2 ENSEMBL cdna:known chromosome:CEL140:II:7874178:7877915:-1 gene:T01H3.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018636 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7874221-7877907(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01H3.2
Entrez Gene 174271 Entrez gene
SwissProt Q22088 EMBL-EBI
WormBase CE23938 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92690 Hypothetical protein T01H3.2 [Caenorhabditis elegans] ref|NP_495658.1| T01H3.2 [Caenorhabditis elegans] 0.0
blast CAE59827 Hypothetical protein CBG03299 [Caenorhabditis briggsae] 0.0
blast EAL30819 GA16767-PA [Drosophila pseudoobscura] 7.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.7E-9
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.1E-9
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.5E-9
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.4E-9
Pfam IPR006624 EMBL-EBI Beta-propeller repeat TECPR 2.7E-9
Sequence
Target Sequence 
>C. ELEGANS:173695_S_AT
tcctatccaatgcgttagagtctctaaaatagaatcatgtgagggaacaatagttgtggt
agtactcacaaaggatggccatatattgatacgaaacggagtggacagagaacactttac
tggtacaaattggacagagatactcacggattctcctatttcatctatgcatttacaatg
ggaaggaatgaaattatggtgcgctacttatgatggaacgattttatcaagaagtctgac
aaactcaaaatcatcttccttcctatcaagttcagattggaggcaccttgatctagatac
atctgtgataactgataatatatctcccaaagctgtgaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTATCCAATGCGTTAGAGTCTCT 11 593 2326 Antisense
GGTAGTACTCACAAAGGATGGCCAT 413 503 2383 Antisense
GGACAGAGAACACTTTACTGGTACA 137 527 2428 Antisense
GACAGAGATACTCACGGATTCTCCT 123 367 2458 Antisense
GGATTCTCCTATTTCATCTATGCAT 470 509 2473 Antisense
TATGGTGCGCTACTTATGATGGAAC 684 655 2520 Antisense
CAAACTCAAAATCATCTTCCTTCCT 696 191 2565 Antisense
CATCTTCCTTCCTATCAAGTTCAGA 449 213 2577 Antisense
AAGTTCAGATTGGAGGCACCTTGAT 669 155 2593 Antisense
GGCACCTTGATCTAGATACATCTGT 445 535 2607 Antisense
ATATATCTCCCAAAGCTGTGAATGA 115 19 2643 Antisense
Sequence Source Affymetrix Proprietary Database