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[173694_s_at]

Description AV194821 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F55F8.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194821 /WB_GENE_ID=F55F8.6 /WP=CE11198 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk634c11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_high_8_8 > 14      6grp_highest_nonorm > 82      6grp_total > 76      4grp_total > 09      6grp_highest_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 261.4
(-3)
P 		284.2
(-2.4)
P 		281.2
(-2.5)
P 		497.7
(3)
P 		236
B 269.4
(-2.9)
M 		265.8
(-3)
P 		311.3
(-1.9)
P 		505
(3)
P 		239
C 273.3
(-3)
P 		356.5
(-0.7)
P 		344.4
(-1)
P 		486
(3)
P 		213
avr 268
(-3) 		302.2
(-2.1) 		312.3
(-1.8) 		496.2
(3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 275.5
(-1.6)
P 		228.4
(-3)
P 		402.3
(2.2)
P 		326.7
(-0.1)
P 		360.2
(0.9)
P 		429.4
(3)
P 		201
B 239.8
(-3)
P 		311.2
(-1.1)
P 		355.4
(0.1)
P 		372
(0.6)
P 		380.2
(0.8)
P 		460.9
(3)
P 		221
C 225.9
(-3)
P 		317.6
(-1)
P 		305.6
(-1.3)
P 		335.8
(-0.6)
P 		303.9
(-1.3)
P 		505.2
(3)
P 		279
avr 247.1
(-3) 		285.7
(-1.9) 		354.4
(-0) 		344.8
(-0.3) 		348.1
(-0.2) 		465.2
(3) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 95.2
(3)
P 		61.7
(-3)
P 		73.5
(-0.9)
P 		72.9
(-1)
P 		34
B 85.9
(-0.1)
M 		65.7
(-3)
P 		72.1
(-2.1)
P 		107.6
(3)
P 		42
C 90.5
(-1.6)
P 		102.5
(0.2)
P 		120
(3)
P 		81.9
(-3)
P 		38
avr 90.5
(3) 		76.6
(-3) 		88.5
(2.1) 		87.5
(1.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 50.8
(-3)
P 		81.2
(0.2)
P 		87.6
(0.8)
P 		82.9
(0.3)
P 		108.7
(3)
P 		104.5
(2.6)
P 		58
B 83.4
(-3)
P 		103.6
(-1.6)
P 		86.3
(-2.8)
P 		98.5
(-2)
P 		154.5
(1.8)
P 		171.9
(3)
P 		89
C 83.7
(-2)
P 		96.9
(-1.3)
P 		77.8
(-2.4)
P 		67.5
(-3)
P 		98.3
(-1.2)
P 		169.1
(3)
P 		102
avr 72.6
(-3) 		93.9
(-1.3) 		83.9
(-2.1) 		83
(-2.2) 		120.5
(0.8) 		148.5
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173694_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22724
Sequence Type Exemplar sequence
Representative Public ID AV194821 NCBI
Target Description AV194821 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F55F8.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194821 /WB_GENE_ID=F55F8.6 /WP=CE11198 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk634c11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059255 NCBI Caenorhabditis elegans F55F8.6 (F55F8.6) mRNA, complete cds. 11/11 None
SNAP00000024470 ENSEMBL cdna:SNAP chromosome:CEL140:I:5658179:5658712:-1 11/11 None
GENEFINDER00000024486 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5658179:5658712:-1 11/11 None
F55F8.6 ENSEMBL cdna:known chromosome:CEL140:I:5657440:5658715:-1 gene:F55F8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5657993-5658713(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55F8.6
Entrez Gene 3565409 Entrez gene
SwissProt P91344 EMBL-EBI
WormBase CE11198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37810 Hypothetical protein F55F8.6 [Caenorhabditis elegans] ref|NP_491656.1| F55F8.6 [Caenorhabditis elegans] 1.0E-87
blast CAE68941 Hypothetical protein CBG14921 [Caenorhabditis briggsae] 1.0E-74
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491656.1 1 142-159
F55F8.6 1 142-159
SNAP00000024470 1 142-159
GENEFINDER00000024486 1 142-159
Sequence
Target Sequence 
>C. ELEGANS:173694_S_AT
cgtggacatggcggaggtccttctcgtcgtacgaatcgtcaatcacttgtcgaacaaatg
gaagttccagatagaataactgtaacgggaggtgatacatatggaagaattacggaagat
tatcgtaatagtgtggataaacttccaacggaaaatgctcattatttgactgatgtgcca
gatgtactcactgttgccgatacacaatatccggttgaagatcagcggcgagagctagac
acagcccggacggacagctcgatggttgtcgacgaggatccgctccgtgaactaaaaatg
ctccgtcgccaaatgggtcgaatcagtgcgagagtcttcgagttggaagagaaaaacgag
acacgcagacatcgagagcaagccattttcgtagctcttctcggtgttgcaataacggcg
ttctggtcacttttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGACATGGCGGAGGTCCTTCTC 366 243 56 Antisense
TCCTTCTCGTCGTACGAATCGTCAA 644 591 73 Antisense
GTGCCAGATGTACTCACTGTTGCCG 621 477 230 Antisense
CAGCGGCGAGAGCTAGACACAGCCC 267 203 278 Antisense
GACGGACAGCTCGATGGTTGTCGAC 326 377 304 Antisense
GAGGATCCGCTCCGTGAACTAAAAA 256 403 329 Antisense
GCTCCGTCGCCAAATGGGTCGAATC 388 297 355 Antisense
GACACGCAGACATCGAGAGCAAGCC 568 367 415 Antisense
AGCAAGCCATTTTCGTAGCTCTTCT 501 75 432 Antisense
TAGCTCTTCTCGGTGTTGCAATAAC 91 651 447 Antisense
TAACGGCGTTCTGGTCACTTTTGAA 437 639 468 Antisense
Sequence Source Affymetrix Proprietary Database