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[173693_at]

Description AV191580 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F59F4.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV191580 /WB_GENE_ID=F59F4.3 /WP=CE20906 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk595e8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 80      6grp_total > 07      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 247.5
(3)
P 		112
(-3)
P 		200.5
(0.9)
P 		126.6
(-2.4)
P 		136
B 257
(3)
P 		112.7
(-2.6)
P 		152.5
(-1.1)
P 		102.7
(-3)
A 		154
C 195.4
(3)
P 		74.6
(-3)
P 		145.9
(0.5)
P 		94.5
(-2)
P 		121
avr 233.3
(3) 		99.8
(-3) 		166.3
(-0) 		107.9
(-2.6) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 306.8
(3)
P 		195.2
(-1.1)
P 		141.7
(-3)
P 		192.9
(-1.1)
P 		155
(-2.5)
P 		179
(-1.6)
P 		165
B 254
(3)
P 		240.3
(2.5)
P 		190.6
(0.8)
P 		171.5
(0.1)
P 		84.3
(-3)
P 		181.2
(0.4)
P 		170
C 208.8
(3)
P 		195.7
(2.2)
P 		190.2
(1.9)
P 		143.5
(-1)
P 		111.1
(-3)
P 		186.6
(1.6)
P 		98
avr 256.5
(3) 		210.4
(1) 		174.2
(-0.5) 		169.3
(-0.7) 		116.8
(-3) 		182.3
(-0.2) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 90.1
(3)
P 		24.3
(-2.5)
P 		52.4
(-0.2)
P 		18.5
(-3)
P 		72
B 82
(3)
P 		27.8
(-2.4)
P 		35.3
(-1.7)
P 		21.9
(-3)
A 		60
C 64.7
(3)
P 		21.4
(-2.3)
P 		50.9
(1.3)
P 		15.9
(-3)
P 		49
avr 78.9
(3) 		24.5
(-2.4) 		46.2
(-0.3) 		18.8
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 56.6
(1)
P 		69.4
(3)
P 		30.9
(-3)
P 		48.9
(-0.2)
P 		46.8
(-0.5)
P 		43.6
(-1)
P 		39
B 88.4
(3)
P 		80
(2.1)
P 		46.3
(-1.7)
P 		45.4
(-1.8)
P 		34.2
(-3)
P 		67.6
(0.7)
P 		54
C 77.4
(3)
P 		59.7
(0.8)
P 		48.4
(-0.6)
P 		28.9
(-3)
P 		36
(-2.1)
P 		62.5
(1.2)
P 		49
avr 74.1
(3) 		69.7
(2.2) 		41.9
(-2.5) 		41.1
(-2.6) 		39
(-3) 		57.9
(0.2) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26103
Sequence Type Exemplar sequence
Representative Public ID AV191580 NCBI
Target Description AV191580 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F59F4.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV191580 /WB_GENE_ID=F59F4.3 /WP=CE20906 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk595e8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078204 NCBI Caenorhabditis elegans F59F4.3 (F59F4.3) mRNA, complete cds. 11/11 None
F59F4.3 ENSEMBL cdna:known chromosome:CEL140:X:15842343:15847506:-1 gene:F59F4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15842353-15847497(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59F4.3
Entrez Gene 181670 Entrez gene
SwissProt Q93840 EMBL-EBI
WormBase CE31551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03159 Hypothetical protein F59F4.3 [Caenorhabditis elegans] ref|NP_510605.2| F59F4.3 [Caenorhabditis elegans] 0.0
blast CAE69735 Hypothetical protein CBG16006 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510605.2 3 21-40,418-435,448-470
F59F4.3 3 21-40,418-435,448-470
Sequence
Target Sequence 
>C. ELEGANS:173693_AT
caacccagctggtgatccttgatgctttctcaaatagtttcaaatcgcccaagcagctgt
ctttgtctagtttttattattatctttcctctatttcctccaagtccttctattctcagc
ttcaaccattgccgttctttccgcacacaacgaactgatcaaacatgtttttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCCAGCTGGTGATCCTTGATGC 272 187 1505 Antisense
GGTGATCCTTGATGCTTTCTCAAAT 305 501 1515 Antisense
TTCTCAAATAGTTTCAAATCGCCCA 99 691 1531 Antisense
TCAAATCGCCCAAGCAGCTGTCTTT 420 629 1544 Antisense
GCAGCTGTCTTTGTCTAGTTTTTAT 115 315 1557 Antisense
GTTTTTATTATTATCTTTCCTCTAT 252 449 1574 Antisense
TATTATTATCTTTCCTCTATTTCCT 404 663 1579 Antisense
TCTATTCTCAGCTTCAACCATTGCC 396 615 1613 Antisense
CGTTCTTTCCGCACACAACGAACTG 604 247 1637 Antisense
TCCGCACACAACGAACTGATCAAAC 102 597 1644 Antisense
CGAACTGATCAAACATGTTTTTCTT 391 251 1655 Antisense
Sequence Source Affymetrix Proprietary Database