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[173692_at]

Description AV195051 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=E04A4.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195051 /WB_GENE_ID=E04A4.5 /WP=CE16966 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk637a6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 0      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 67      6grp_total > 14      4grp_total > 59      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 986
1 2 3 4 range
A 1910.5
(-0.1)
P 		2006.2
(0.5)
P 		2400.3
(3)
P 		1456.7
(-3)
P 		944
B 2180.6
(3)
P 		2097.6
(2.3)
P 		1861.3
(0.1)
P 		1509.3
(-3)
P 		671
C 1868.7
(-0.5)
P 		2440.7
(3)
P 		2365.3
(2.5)
P 		1455.1
(-3)
P 		986
avr 1986.6
(1.2) 		2181.5
(2.8) 		2209
(3) 		1473.7
(-3) 		735

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 977
1 2 3 4 5 6 range
A 2294
(3)
P 		1868.4
(-0.1)
P 		1720.2
(-1.2)
P 		1675.2
(-1.5)
P 		1474.2
(-3)
P 		1493.2
(-2.9)
P 		820
B 2132.1
(2.8)
P 		2133.8
(2.9)
P 		1317.5
(-3)
P 		2154.3
(3)
P 		1466.4
(-1.9)
P 		1457.9
(-2)
P 		837
C 1752.9
(1.1)
P 		1863.4
(2.2)
P 		1671.7
(0.4)
P 		1946.2
(3)
P 		1324.1
(-3)
P 		1547.2
(-0.8)
P 		622
avr 2059.7
(3) 		1955.2
(2) 		1569.8
(-1.6) 		1925.2
(1.7) 		1421.6
(-3) 		1499.4
(-2.3) 		638
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 611
1 2 3 4 range
A 695.6
(3)
P 		435.5
(-0.2)
P 		627.5
(2.2)
P 		213.2
(-3)
P 		482
B 695.4
(3)
P 		518.1
(0.2)
P 		431.3
(-1.2)
P 		321.6
(-3)
P 		374
C 618.6
(0.9)
P 		701.7
(1.7)
P 		824.4
(3)
P 		245.4
(-3)
P 		579
avr 669.9
(3) 		551.8
(1.3) 		627.7
(2.4) 		260.1
(-3) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 422
1 2 3 4 5 6 range
A 422.9
(-1.8)
P 		664.5
(3)
P 		374.6
(-2.8)
P 		424.9
(-1.8)
P 		444.8
(-1.4)
P 		363.5
(-3)
P 		301
B 741.9
(3)
P 		710.3
(2.6)
P 		319.9
(-3)
P 		570.6
(0.6)
P 		595.8
(0.9)
P 		543.6
(0.2)
P 		422
C 649.7
(3)
P 		568.6
(1.1)
P 		425.5
(-2.2)
P 		391.4
(-3)
P 		428.5
(-2.1)
P 		517.9
(-0.1)
P 		258
avr 604.8
(2.1) 		647.8
(3) 		373.3
(-3) 		462.3
(-1.1) 		489.7
(-0.5) 		475
(-0.8) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24917
Sequence Type Exemplar sequence
Representative Public ID AV195051 NCBI
Target Description AV195051 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=E04A4.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195051 /WB_GENE_ID=E04A4.5 /WP=CE16966 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk637a6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068226(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068226 NCBI Caenorhabditis elegans E04A4.5 (E04A4.5) mRNA, complete cds. 11/11 None
E04A4.5 ENSEMBL cdna:known chromosome:CEL140:IV:4744379:4745485:-1 gene:E04A4.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4744395-4745471(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E04A4.5
Entrez Gene 177242 Entrez gene
SwissProt O44477 EMBL-EBI
WormBase CE16966 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:255941_AT mitochondrial import inner membrane translocase subunit Tim17, putative at
RAE230A:1370304_AT similar to translocator of inner mitochondrial membrane 17a rn
RAT230_2:1370304_AT similar to translocator of inner mitochondrial membrane 17a rn
YEAST_2:1778107_AT Essential constituent of the mitochondrial inner membrane presequence translocase; interacts with Pam18p to recruit the presequence translocase-associated motor (PAM complex) and also required for protein sorting during import Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5744 mitochondrial inner membrane presequence translocase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15450 protein translocase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB92039 Hypothetical protein E04A4.5 [Caenorhabditis elegans] ref|NP_500627.1| E04A4.5 [Caenorhabditis elegans] sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit Tim17 1.0E-100
blast CAE58576 Hypothetical protein CBG01742 [Caenorhabditis briggsae] 2.0E-99
blast EAA11986 ENSANGP00000016107 [Anopheles gambiae str. PEST] ref|XP_316737.2| ENSANGP00000016107 [Anopheles gambiae str. PEST] 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003397 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim17/22 1.2E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500627.1 4 17-36,59-81,88-105,109-131
E04A4.5 4 17-36,59-81,88-105,109-131
Sequence
Target Sequence 
>C. ELEGANS:173692_AT
atctgtcctaaatcttttttcactcatatccgtttttctttatgcttttgtctcttatct
caattttcccccctccaacttcggtgatcggccgattcctctacattttttaggagctcc
aattttattagttacatattacattagtgttgtttgttttgttgatgatgttcattgcga
tcacgaatcttatttagattcgcgctttccttccaaaaatcaagtttcagatccgtatgg
gtgcacggcatctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGTCCTAAATCTTTTTTCACTC 43 33 549 Antisense
TTTTCACTCATATCCGTTTTTCTTT 553 675 565 Antisense
GTTTTTCTTTATGCTTTTGTCTCTT 354 449 580 Antisense
TGCTTTTGTCTCTTATCTCAATTTT 504 579 591 Antisense
CCAACTTCGGTGATCGGCCGATTCC 597 275 623 Antisense
GGCCGATTCCTCTACATTTTTTAGG 479 539 638 Antisense
GGAGCTCCAATTTTATTAGTTACAT 98 521 661 Antisense
GATGTTCATTGCGATCACGAATCTT 126 411 715 Antisense
TCTTATTTAGATTCGCGCTTTCCTT 684 613 736 Antisense
AAGTTTCAGATCCGTATGGGTGCAC 447 155 770 Antisense
ATCCGTATGGGTGCACGGCATCTCC 447 33 779 Antisense
Sequence Source Affymetrix Proprietary Database