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[173690_at]

Description AV189706 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F46B6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV189706 /WB_GENE_ID=F46B6.5 /WP=CE20810 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561f1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 84      6grp_total > 67      4grp_total > 23      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 679.7
(3)
P 		442.9
(-2.9)
P 		439.1
(-3)
P 		617.9
(1.5)
P 		241
B 725.7
(3)
P 		384.1
(-2.4)
P 		345.9
(-3)
P 		556.4
(0.3)
P 		380
C 640.8
(3)
P 		373.9
(-3)
P 		448.3
(-1.3)
P 		580.8
(1.7)
P 		267
avr 682.1
(3) 		400.3
(-3) 		411.1
(-2.8) 		585
(0.9) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 716.3
(-0.3)
P 		589.6
(-2)
P 		521.2
(-3)
P 		543.9
(-2.7)
P 		721.1
(-0.2)
P 		952.3
(3)
P 		431
B 497.3
(-2.8)
P 		607.4
(-1.5)
P 		484.4
(-3)
P 		665.6
(-0.9)
P 		592.1
(-1.7)
P 		991.5
(3)
P 		507
C 635.9
(-1.1)
P 		624.6
(-1.5)
P 		719.4
(1.6)
P 		688.5
(0.6)
P 		577.2
(-3)
P 		763.2
(3)
P 		186
avr 616.5
(-2.2) 		607.2
(-2.4) 		575
(-3) 		632.7
(-1.9) 		630.1
(-2) 		902.3
(3) 		327
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 247.5
(3)
P 		96.1
(-2.8)
P 		114.8
(-2.1)
P 		90.4
(-3)
P 		157
B 231.4
(3)
P 		94.9
(-2.4)
P 		80.2
(-3)
P 		118.6
(-1.5)
P 		151
C 212.1
(3)
P 		107.5
(-2.5)
P 		156.2
(0.1)
P 		97.9
(-3)
P 		114
avr 230.3
(3) 		99.5
(-3) 		117.1
(-2.2) 		102.3
(-2.9) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 132
(-2.1)
P 		209.7
(1.9)
P 		113.5
(-3)
P 		137.9
(-1.8)
P 		217.6
(2.3)
P 		231.9
(3)
P 		118
B 173
(-1.7)
P 		202.2
(-1)
P 		117.6
(-3)
P 		176.3
(-1.6)
P 		240.6
(-0.1)
P 		369.7
(3)
P 		252
C 235.7
(2)
P 		190.6
(-0.3)
P 		183.1
(-0.7)
P 		138.5
(-3)
P 		186.8
(-0.5)
P 		255.5
(3)
P 		117
avr 180.2
(-1.3) 		200.8
(-0.5) 		138.1
(-3) 		150.9
(-2.5) 		215
(0.1) 		285.7
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25267
Sequence Type Exemplar sequence
Representative Public ID AV189706 NCBI
Target Description AV189706 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F46B6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV189706 /WB_GENE_ID=F46B6.5 /WP=CE20810 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561f1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073123 NCBI Caenorhabditis elegans F46B6.5a (F46B6.5) mRNA, complete cds. 11/11 None
F46B6.5a ENSEMBL cdna:known chromosome:CEL140:V:9782132:9785644:-1 gene:F46B6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179373 3 1 NM_073123 173690_at (11), 177422_s_at (11)
NM_182362 177422_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9782222-9785532(-) 99.96 99.96
Public Domain and Genome References
Ensembl F46B6.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94828 Hypothetical protein F46B6.5a [Caenorhabditis elegans] ref|NP_505524.2| F46B6.5a [Caenorhabditis elegans] 0.0
blast CAD54137 Hypothetical protein F46B6.5b [Caenorhabditis elegans] ref|NP_872162.2| F46B6.5b [Caenorhabditis elegans] 0.0
blast CAD91633 Hypothetical protein F46B6.5c [Caenorhabditis elegans] ref|NP_001023935.1| F46B6.5c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173690_AT
tattttccgggtatgtccacaagtcattcaaaacatttttccattctataattcagctgt
gttactttttttatgtatatcctatgatcctatatcatgttcccattttttttgtccgtt
caataggttctcccaaccatatcaattgtattcctgtaacttgagttttaggcatatccc
agccgattacaaatattgttttatggaagagttagtcttgaaacttattttcccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTCCGGGTATGTCCACAAGTC 9 663 2447 Antisense
ATTTTTCCATTCTATAATTCAGCTG 387 15 2481 Antisense
AATTCAGCTGTGTTACTTTTTTTAT 187 177 2496 Antisense
TATGTATATCCTATGATCCTATATC 208 657 2518 Antisense
GATCCTATATCATGTTCCCATTTTT 8 417 2532 Antisense
TTTGTCCGTTCAATAGGTTCTCCCA 68 667 2557 Antisense
GGTTCTCCCAACCATATCAATTGTA 506 507 2572 Antisense
AATTGTATTCCTGTAACTTGAGTTT 515 177 2590 Antisense
ACTTGAGTTTTAGGCATATCCCAGC 15 105 2605 Antisense
GGCATATCCCAGCCGATTACAAATA 227 537 2617 Antisense
TAGTCTTGAAACTTATTTTCCCGCT 115 655 2659 Antisense
Sequence Source Affymetrix Proprietary Database