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[173688_s_at]

Description AU109762 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T22B7.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109762 /WB_GENE_ID=T22B7.7 /WP=CE13952 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710h3 : 5prime end, single read.
Cluster 6grp_total > 94      4grp_total > 27      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 6.7
(-3)
A 		71.4
(2.1)
A 		8.5
(-2.9)
A 		83.3
(3)
A 		77
B 22.8
(0.7)
A 		16.2
(-3)
A 		26.8
(3)
A 		16.6
(-2.8)
A 		11
C 47.6
(1.6)
A 		42.3
(0.6)
A 		21.1
(-3)
A 		56
(3)
A 		35
avr 25.7
(-1.8) 		43.3
(1.4) 		18.8
(-3) 		52
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 18.4
(-2.4)
A 		7.9
(-3)
A 		47.7
(-0.7)
A 		31
(-1.7)
A 		110.6
(3)
A 		62.5
(0.2)
A 		103
B 9.9
(-3)
A 		14.8
(-2.8)
A 		43.4
(-1.3)
A 		50.9
(-1)
A 		130.1
(3)
P 		76.9
(0.3)
A 		120
C 30.3
(-2.4)
A 		26.8
(-2.7)
A 		22.1
(-3)
A 		73
(0.5)
A 		110.4
(3)
P 		97.8
(2.1)
A 		88
avr 19.5
(-2.8) 		16.5
(-3) 		37.7
(-1.7) 		51.6
(-0.9) 		117
(3) 		79.1
(0.7) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.4
(-2.9)
A 		15.5
(3)
A 		2.2
(-3)
A 		12.2
(1.5)
A 		13
B 7.3
(3)
A 		4
(-2.2)
A 		6.2
(1.3)
A 		3.5
(-3)
A 		4
C 15.8
(3)
A 		12.2
(0.4)
A 		7.4
(-3)
A 		9.4
(-1.6)
A 		8
avr 8.5
(0.6) 		10.6
(3) 		5.3
(-3) 		8.4
(0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 3.4
(-2.9)
A 		2.8
(-3)
A 		10.4
(-1.5)
A 		7.9
(-2)
A 		33.4
(3)
A 		15.2
(-0.6)
A 		31
B 3.4
(-3)
A 		4.9
(-2.8)
A 		10.6
(-2.1)
A 		13.5
(-1.8)
A 		52.9
(3)
P 		28.7
(0.1)
A 		50
C 11.2
(-1.9)
A 		8.2
(-2.5)
A 		5.6
(-3)
A 		14.7
(-1.2)
A 		35.7
(3)
P 		32.7
(2.4)
A 		30
avr 6
(-2.9) 		5.3
(-3) 		8.9
(-2.4) 		12
(-1.9) 		40.7
(3) 		25.5
(0.4) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173688_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25808
Sequence Type Exemplar sequence
Representative Public ID AU109762 NCBI
Target Description AU109762 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T22B7.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109762 /WB_GENE_ID=T22B7.7 /WP=CE13952 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710h3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076553 NCBI Caenorhabditis elegans T22B7.7 (T22B7.7) mRNA, complete cds. 11/11 None
GENEFINDER00000005792 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5650705:5653754:-1 11/11 None
SNAP00000005787 ENSEMBL cdna:SNAP chromosome:CEL140:X:5651972:5653754:-1 11/11 None
T22B7.7 ENSEMBL cdna:known chromosome:CEL140:X:5651893:5653797:-1 gene:T22B7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5651972-5653755(-) 99.83 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B7.7
Entrez Gene 180832 Entrez gene
SwissProt Q23044 EMBL-EBI
WormBase CE13952 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04596 Hypothetical protein T22B7.7 [Caenorhabditis elegans] ref|NP_508954.1| T22B7.7 [Caenorhabditis elegans] 0.0
blast CAE68777 Hypothetical protein CBG14719 [Caenorhabditis briggsae] 0.0
blast AAB66189 Hypothetical protein T07D3.9a [Caenorhabditis elegans] ref|NP_493843.2| T07D3.9a [Caenorhabditis elegans] 1.0E-32
Sequence
Target Sequence 
>C. ELEGANS:173688_S_AT
cgagtttctaactgccagactggttttggcgtcactcgatggaaccaacacatcacaaaa
acttccaaccaatcaacttcttccatcaacacccattgaaaatttcttgaatcaacagag
acacgaggccaacacatcacggccttgtattccagaactaggaacaattgaactaccagt
tataaaggatggtgaagtcaccatgaactcaaccaatgttgaaacaacgacaattgcaca
gccagaacacgaaaacccatacggatcagtttttggtggttttttggttaggaagggtct
tgaaactgctgaactttgcgcaaagatgttctccaaaacttccgttcgagtatcttcaat
tgatgacgcagagtttatgaaagtcgtggaaattggaagtattttaaagttcagcgcttt
tgtctgcaacgttgataacaaggaacagaaattccaggttaactctcaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGTTTCTAACTGCCAGACTGGTT 479 247 565 Antisense
GCGTCACTCGATGGAACCAACACAT 690 291 593 Antisense
CTTCTTCCATCAACACCCATTGAAA 702 219 641 Antisense
AGACACGAGGCCAACACATCACGGC 529 71 683 Antisense
ATCACGGCCTTGTATTCCAGAACTA 298 27 700 Antisense
GGTGAAGTCACCATGAACTCAACCA 392 499 755 Antisense
ACAGCCAGAACACGAAAACCCATAC 274 91 802 Antisense
GGGTCTTGAAACTGCTGAACTTTGC 335 497 859 Antisense
AAACTTCCGTTCGAGTATCTTCAAT 170 127 900 Antisense
AGTTCAGCGCTTTTGTCTGCAACGT 464 63 972 Antisense
GAAATTCCAGGTTAACTCTCAAGTG 429 361 1012 Antisense
Sequence Source Affymetrix Proprietary Database