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[173687_s_at]

Description AV186799 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R11A5.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV186799 /WB_GENE_ID=R11A5.3 /WP=CE12726 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk504c4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      6grp_highest_nonorm > 99      6grp_total > 76      4grp_total > 39      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1495
1 2 3 4 range
A 1174.6
(3)
P 		86.8
(-3)
A 		168.9
(-2.5)
P 		522.4
(-0.6)
P 		1088
B 1294
(3)
P 		111.5
(-3)
A 		117
(-3)
P 		509.2
(-1)
P 		1183
C 1581.3
(3)
P 		127.2
(-3)
A 		119.9
(-3)
P 		779.9
(-0.3)
P 		1461
avr 1350
(3) 		108.5
(-3) 		135.3
(-2.9) 		603.8
(-0.6) 		1242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3560
1 2 3 4 5 6 range
A 466.8
(-3)
P 		483
(-3)
P 		970.5
(-1.9)
P 		992.6
(-1.9)
P 		811.5
(-2.3)
P 		3334.7
(3)
P 		2868
B 308.5
(-3)
P 		510.5
(-2.7)
P 		783.6
(-2.2)
P 		1010.7
(-1.8)
P 		828.8
(-2.1)
P 		3868.5
(3)
P 		3560
C 327.8
(-3)
P 		494.3
(-2.7)
P 		1113
(-1.5)
P 		1308.4
(-1.1)
P 		603.3
(-2.5)
P 		3419
(3)
P 		3091
avr 367.7
(-3) 		495.9
(-2.8) 		955.7
(-1.9) 		1103.9
(-1.6) 		747.9
(-2.3) 		3540.7
(3) 		3173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 505
1 2 3 4 range
A 427.7
(3)
P 		18.8
(-3)
A 		44.1
(-2.6)
P 		76.5
(-2.2)
P 		409
B 412.7
(3)
P 		27.5
(-3)
A 		27.1
(-3)
P 		108.5
(-1.7)
P 		386
C 523.4
(3)
P 		36.6
(-3)
A 		41.8
(-2.9)
P 		131.5
(-1.8)
P 		487
avr 454.6
(3) 		27.6
(-3) 		37.7
(-2.9) 		105.5
(-1.9) 		427

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1357
1 2 3 4 5 6 range
A 86
(-3)
P 		171.8
(-2.3)
P 		211.4
(-2)
P 		251.7
(-1.6)
P 		244.9
(-1.7)
P 		811.9
(3)
P 		726
B 107.3
(-3)
P 		169.9
(-2.7)
P 		190.3
(-2.6)
P 		267.7
(-2.3)
P 		336.7
(-2)
P 		1442.5
(3)
P 		1335
C 121.5
(-3)
P 		150.8
(-2.8)
P 		283.3
(-2.1)
P 		263.1
(-2.2)
P 		195.2
(-2.6)
P 		1144.5
(3)
P 		1023
avr 104.9
(-3) 		164.2
(-2.7) 		228.3
(-2.3) 		260.8
(-2.1) 		258.9
(-2.1) 		1133
(3) 		1028
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173687_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23043
Sequence Type Exemplar sequence
Representative Public ID AV186799 NCBI
Target Description AV186799 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R11A5.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV186799 /WB_GENE_ID=R11A5.3 /WP=CE12726 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk504c4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059772 NCBI Caenorhabditis elegans R11A5.3 (R11A5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000037588 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7870335:7871649:-1 11/11 None
SNAP00000037584 ENSEMBL cdna:SNAP chromosome:CEL140:I:7871039:7871649:-1 11/11 None
R11A5.3 ENSEMBL cdna:known chromosome:CEL140:I:7870979:7871653:-1 gene:R11A5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7870920-7871581(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11A5.3
Entrez Gene 172555 Entrez gene
SwissProt O02285 EMBL-EBI
WormBase CE12726 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05599 Hypothetical protein R11A5.3 [Caenorhabditis elegans] ref|NP_492173.1| R11A5.3 [Caenorhabditis elegans] 4.0E-84
blast CAB05599 Hypothetical protein R11A5.3 [Caenorhabditis elegans] ref|NP_492173.1| R11A5.3 [Caenorhabditis elegans] 6.0E-82
blast CAE56127 Hypothetical protein CBG23737 [Caenorhabditis briggsae] 1.0E-28
blast CAE56127 Hypothetical protein CBG23737 [Caenorhabditis briggsae] 3.0E-28
Sequence
Target Sequence 
>C. ELEGANS:173687_S_AT
tgtcgtacccaatgactccagtcaagagaccaacaatttcacatggcattcaagcatcgg
atggaatcatcaaaagaccaattgagggaaacaagaaaaggcttagtgcaccaattaagg
ataaacctgagcacagaattgcaccagaagaaatcacaaatgcaccaacaacttctcggc
ttcgccgtgcaccagaattcgatgtggttgtcatcatgaaaacaacaaaaaaggatagaa
aaaagataattcagacaccaagacgtcgatcaataaagcttgcgaatgtaccaatgacac
ctaaaactgctccgatccggagacacagcactggaggaaacgcagcaatgtcgactccaa
aaagaagaaaaagctttggatcattggctccagttcgacaacatcgtgtcgagacccgga
aagttgtgcggaatttgatggctgttcgaccaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGTACCCAATGACTCCAGTCAA 665 555 15 Antisense
TTCACATGGCATTCAAGCATCGGAT 707 685 52 Antisense
AAATGCACCAACAACTTCTCGGCTT 13 121 172 Antisense
TTCGCCGTGCACCAGAATTCGATGT 116 697 195 Antisense
ATTCAGACACCAAGACGTCGATCAA 293 11 263 Antisense
GCTTGCGAATGTACCAATGACACCT 176 307 292 Antisense
AATGACACCTAAAACTGCTCCGATC 120 165 307 Antisense
TCCGATCCGGAGACACAGCACTGGA 73 595 325 Antisense
AAACGCAGCAATGTCGACTCCAAAA 688 125 352 Antisense
GGATCATTGGCTCCAGTTCGACAAC 640 511 392 Antisense
AATTTGATGGCTGTTCGACCACCAC 650 173 446 Antisense
Sequence Source Affymetrix Proprietary Database