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[173686_s_at]

Description AV196114 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y7A9D.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196114 /WB_GENE_ID=Y7A9D.1 /WP=CE14850 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk650a3 : 5prime end, single read.
Cluster 6grp_total > 37      4grp_total > 43      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 123.8
(-1.5)
A 		342.6
(3)
P 		118
(-1.6)
A 		52.6
(-3)
A 		290
B 95.1
(-1.1)
A 		264.2
(3)
P 		113.2
(-0.7)
A 		17.5
(-3)
A 		247
C 135
(-2.9)
A 		363.4
(3)
P 		183.9
(-1.7)
A 		132.2
(-3)
A 		231
avr 118
(-1.8) 		323.4
(3) 		138.4
(-1.3) 		67.4
(-3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 222.1
(2.7)
P 		234.2
(3)
P 		65.1
(-1.8)
A 		21.2
(-3)
A 		115.8
(-0.3)
M 		153.1
(0.7)
P 		213
B 262.1
(3)
P 		254.4
(2.7)
P 		112.5
(-2)
A 		84.1
(-3)
M 		110.6
(-2.1)
A 		221.3
(1.6)
P 		178
C 260.9
(2.3)
P 		282.9
(3)
P 		95.2
(-2.7)
M 		92.1
(-2.8)
A 		86.5
(-3)
A 		192.2
(0.2)
P 		196
avr 248.4
(2.7) 		257.2
(3) 		90.9
(-2.2) 		65.8
(-3) 		104.3
(-1.8) 		188.9
(0.9) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 45.1
(0.4)
A 		74.4
(3)
P 		30.8
(-0.9)
A 		7.7
(-3)
A 		67
B 30.3
(-0.4)
A 		65.3
(3)
P 		26.2
(-0.8)
A 		3.7
(-3)
A 		62
C 44.7
(-1.4)
A 		104.5
(3)
P 		64.1
(0.1)
A 		22.3
(-3)
A 		82
avr 40
(-0.5) 		81.4
(3) 		40.4
(-0.5) 		11.2
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 40.9
(-0.3)
P 		83.3
(3)
P 		14.2
(-2.3)
A 		5.4
(-3)
A 		34.9
(-0.7)
M 		37.3
(-0.5)
P 		78
B 91.2
(3)
P 		84.7
(2.4)
P 		27.3
(-2.6)
A 		22.3
(-3)
M 		44.9
(-1)
A 		82.5
(2.2)
P 		69
C 96.7
(3)
P 		86.3
(2.2)
P 		24.2
(-2.6)
M 		18.5
(-3)
A 		28
(-2.3)
A 		64.3
(0.5)
P 		78
avr 76.3
(2.3) 		84.8
(3) 		21.9
(-2.4) 		15.4
(-3) 		35.9
(-1.2) 		61.4
(1) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173686_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24804
Sequence Type Exemplar sequence
Representative Public ID AV196114 NCBI
Target Description AV196114 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y7A9D.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196114 /WB_GENE_ID=Y7A9D.1 /WP=CE14850 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk650a3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070550 NCBI Caenorhabditis elegans Y7A9D.1 (Y7A9D.1) mRNA, complete cds. 11/11 None
SNAP00000024139 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16381516:16382138:-1 11/11 None
GENEFINDER00000024140 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16381516:16384963:-1 10/11 None
Y7A9D.1 ENSEMBL cdna:known chromosome:CEL140:IV:16381354:16382172:-1 gene:Y7A9D.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16381370-16382145(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y7A9D.1
Entrez Gene 178455 Entrez gene
SwissProt O18259 EMBL-EBI
WormBase CE14850 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16544 Hypothetical protein Y7A9D.1 [Caenorhabditis elegans] ref|NP_502951.1| Y7A9D.1 [Caenorhabditis elegans] 6.0E-42
blast CAE68154 Hypothetical protein CBG13809 [Caenorhabditis briggsae] 3.0E-35
blast CAB16544 Hypothetical protein Y7A9D.1 [Caenorhabditis elegans] ref|NP_502951.1| Y7A9D.1 [Caenorhabditis elegans] 3.0E-21
blast CAE68154 Hypothetical protein CBG13809 [Caenorhabditis briggsae] 2.0E-16
Sequence
Target Sequence 
>C. ELEGANS:173686_S_AT
ctcccacgtttcaccaaaatcaaggaaaattcgaaaatccacgtcagcagagagaagaga
aaaggaaaaggtaacaaaccgactccgacaattggttgccgccgaggaagacactgacca
atacgagctcgtcatggccaccatcgcccacatccgagagctccaggctcagctcaacgg
gaaagaaaactcgctgccacgtggctttgaacaattcttcacctcctccgcctcagtgag
cccactctcgtcgagacccgaatcaccggaatcttctgtggaatcatcatcgccgaggtc
aactgcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCACGTTTCACCAAAATCAAGG 588 231 52 Antisense
AACCGACTCCGACAATTGGTTGCCG 414 143 128 Antisense
ATTGGTTGCCGCCGAGGAAGACACT 142 3 142 Antisense
ACACTGACCAATACGAGCTCGTCAT 673 109 162 Antisense
CTCCAGGCTCAGCTCAACGGGAAAG 697 235 212 Antisense
ACGGGAAAGAAAACTCGCTGCCACG 501 93 228 Antisense
CTCGCTGCCACGTGGCTTTGAACAA 479 227 241 Antisense
TGGCTTTGAACAATTCTTCACCTCC 37 547 253 Antisense
GTCGAGACCCGAATCACCGGAATCT 105 475 301 Antisense
ACCGGAATCTTCTGTGGAATCATCA 42 89 316 Antisense
CATCATCGCCGAGGTCAACTGCATA 437 211 336 Antisense
Sequence Source Affymetrix Proprietary Database