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[173685_s_at]

Description AU113686_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M60.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU113686 /WB_GENE_ID=M60.6 /WP=CE02835 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 91      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 72      6grp_total > 92      4grp_total > 13      6grp_highest_sub > 04_05      6grp_high1_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 440.3
(1.1)
P 		363.8
(-1.3)
P 		310.4
(-3)
P 		498.4
(3)
P 		188
B 462.1
(1.1)
P 		378.3
(-0.8)
P 		284.5
(-3)
P 		543.1
(3)
P 		259
C 407.1
(-0.9)
P 		328.4
(-3)
P 		333.8
(-2.9)
P 		557.9
(3)
P 		230
avr 436.5
(0.4) 		356.8
(-1.7) 		309.6
(-3) 		533.1
(3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 335.5
(-2.2)
P 		407.4
(0.1)
P 		473.4
(2.2)
P 		499.5
(3)
P 		460
(1.8)
P 		308.5
(-3)
P 		191
B 504.4
(1.1)
P 		403.1
(-1.4)
P 		409.2
(-1.3)
P 		434.7
(-0.6)
P 		583.1
(3)
P 		337.8
(-3)
P 		245
C 375.8
(-2.9)
P 		406
(1.2)
P 		412.7
(2.1)
P 		374.9
(-3)
P 		419.4
(3)
P 		388
(-1.2)
P 		45
avr 405.2
(-0.5) 		405.5
(-0.4) 		431.8
(0.7) 		436.4
(0.9) 		487.5
(3) 		344.8
(-3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 160.3
(3)
P 		79
(-2.6)
P 		81.2
(-2.4)
P 		73
(-3)
P 		87
B 147.4
(3)
P 		93.4
(-1)
P 		65.9
(-3)
P 		115.7
(0.7)
P 		82
C 134.8
(3)
P 		94.4
(-3)
P 		116.3
(0.3)
P 		94.1
(-3)
P 		41
avr 147.5
(3) 		88.9
(-2.9) 		87.8
(-3) 		94.3
(-2.3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 61.9
(-3)
P 		144.9
(3)
P 		103.1
(-0)
P 		126.7
(1.7)
P 		138.8
(2.6)
P 		75.1
(-2)
P 		83
B 175.5
(0.3)
P 		134.2
(-1.5)
P 		99.4
(-3)
P 		115.1
(-2.3)
P 		236.9
(3)
P 		126
(-1.8)
P 		138
C 139.3
(3)
P 		123.9
(1.6)
P 		105
(-0.2)
P 		75.4
(-3)
P 		135.7
(2.7)
P 		129.9
(2.1)
P 		64
avr 125.6
(-1) 		134.3
(-0.2) 		102.5
(-3) 		105.7
(-2.7) 		170.5
(3) 		110.3
(-2.3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173685_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25745
Sequence Type Exemplar sequence
Representative Public ID AU113686 NCBI
Target Description AU113686_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M60.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU113686 /WB_GENE_ID=M60.6 /WP=CE02835 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076992 NCBI Caenorhabditis elegans M60.6 (M60.6) mRNA, complete cds. 11/11 None
SNAP00000012322 ENSEMBL cdna:SNAP chromosome:CEL140:X:8248375:8248651:-1 11/11 None
GENEFINDER00000012328 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8248375:8253896:-1 11/11 None
M60.6 ENSEMBL cdna:known chromosome:CEL140:X:8248145:8252396:-1 gene:M60.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8248154-8248651(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M60.6
Entrez Gene 181080 Entrez gene
SwissProt Q9GYM6 EMBL-EBI
WormBase CE31208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99994 Hypothetical protein M60.6 [Caenorhabditis elegans] ref|NP_509393.2| M60.6 [Caenorhabditis elegans] 4.0E-68
blast T28854 hypothetical protein M60.6 - Caenorhabditis elegans 5.0E-36
blast T28854 hypothetical protein M60.6 - Caenorhabditis elegans 9.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509393.2 1 45-67
M60.6 1 45-67
SNAP00000012322 1 13-35
GENEFINDER00000012328 1 103-125
Sequence
Target Sequence 
>C. ELEGANS:173685_S_AT
ttggaaccgactatcgtctcgatgccggcctcatcgccgccgcgattctcgagttccttc
tttcgatcgccacttgcgtcgttgcttcaaggacgctattttcaccattgaaggaactgg
gcgatcaaagtgctaccggagaccttactgttgagatgcaaccattgaatcaatcggaag
aaaacaacacgtattcgtctttgccgaacggatcgacgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAACCGACTATCGTCTCGATGC 360 705 24 Antisense
CCACTTGCGTCGTTGCTTCAAGGAC 615 273 93 Antisense
GTTGCTTCAAGGACGCTATTTTCAC 198 427 104 Antisense
AAGGACGCTATTTTCACCATTGAAG 340 161 112 Antisense
CACCATTGAAGGAACTGGGCGATCA 454 201 126 Antisense
TGGGCGATCAAAGTGCTACCGGAGA 435 553 141 Antisense
TGCTACCGGAGACCTTACTGTTGAG 627 575 154 Antisense
GGAGACCTTACTGTTGAGATGCAAC 174 519 161 Antisense
GAGATGCAACCATTGAATCAATCGG 311 395 176 Antisense
AACAACACGTATTCGTCTTTGCCGA 581 133 206 Antisense
GTCTTTGCCGAACGGATCGACGCAA 215 469 220 Antisense
Sequence Source Affymetrix Proprietary Database