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[173684_s_at]

Description AU108951 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K04C2.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU108951 /WB_GENE_ID=K04C2.3 /WP=CE00721 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk701a4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 78      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 99      6grp_total > 68      4grp_total > 11      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8022
1 2 3 4 range
A 2031.6
(-2.3)
P 		1819.1
(-2.4)
P 		1079.4
(-3)
P 		8830.1
(3)
P 		7751
B 1612.6
(-2.3)
P 		1737.3
(-2.2)
P 		808.1
(-3)
P 		7699.5
(3)
P 		6891
C 2072
(-2.1)
P 		1932.9
(-2.2)
P 		1199.6
(-3)
P 		6828.5
(3)
P 		5629
avr 1905.4
(-2.2) 		1829.8
(-2.3) 		1029
(-3) 		7786
(3) 		6757

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3314
1 2 3 4 5 6 range
A 1123.7
(-2)
P 		850
(-2.5)
P 		567.1
(-3)
P 		809.9
(-2.5)
P 		1125.1
(-2)
P 		3769.2
(3)
P 		3202
B 1144.9
(-1.2)
P 		604
(-2.6)
P 		455
(-3)
P 		596.4
(-2.6)
P 		1132.2
(-1.2)
P 		2753.5
(3)
P 		2299
C 1728.3
(0.4)
P 		651.1
(-3)
P 		751.4
(-2.7)
P 		653.9
(-3)
P 		1268.5
(-1)
P 		2527.7
(3)
P 		1877
avr 1332.3
(-1.2) 		701.7
(-2.7) 		591.2
(-3) 		686.7
(-2.8) 		1175.3
(-1.6) 		3016.8
(3) 		2426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1454
1 2 3 4 range
A 739.7
(-0.3)
P 		394.9
(-2.3)
P 		282.2
(-3)
P 		1292.6
(3)
P 		1010
B 514.3
(-1.7)
P 		429.1
(-2)
P 		187.3
(-3)
P 		1640.8
(3)
P 		1454
C 685.9
(-0.8)
P 		555.7
(-1.9)
P 		418.1
(-3)
P 		1151.4
(3)
P 		733
avr 646.6
(-1) 		459.9
(-2.1) 		295.9
(-3) 		1361.6
(3) 		1066

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 916
1 2 3 4 5 6 range
A 207.1
(-2.4)
P 		302.3
(-1.6)
P 		123.5
(-3)
P 		205.4
(-2.4)
P 		339.5
(-1.4)
P 		917.7
(3)
P 		794
B 398.4
(-1.1)
P 		201
(-2.4)
P 		110.5
(-3)
P 		158
(-2.7)
P 		460
(-0.7)
P 		1026.8
(3)
P 		916
C 640.6
(1.3)
P 		198.7
(-2.4)
P 		191.2
(-2.5)
P 		131.5
(-3)
P 		410.5
(-0.7)
P 		846.2
(3)
P 		715
avr 415.4
(-0.9) 		234
(-2.3) 		141.7
(-3) 		165
(-2.8) 		403.3
(-1) 		930.2
(3) 		789
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173684_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24204
Sequence Type Exemplar sequence
Representative Public ID AU108951 NCBI
Target Description AU108951 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K04C2.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU108951 /WB_GENE_ID=K04C2.3 /WP=CE00721 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk701a4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066095 NCBI Caenorhabditis elegans K04C2.3a (K04C2.3) mRNA, complete cds. 11/11 None
SNAP00000012106 ENSEMBL cdna:SNAP chromosome:CEL140:III:6873050:6873379:1 11/11 None
GENEFINDER00000012113 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6873050:6873379:1 11/11 None
K04C2.3a.2 ENSEMBL cdna:known chromosome:CEL140:III:6872981:6873601:1 gene:K04C2.3 11/11 None
K04C2.3a.1 ENSEMBL cdna:known chromosome:CEL140:III:6873022:6873663:1 gene:K04C2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_181967 5/11 Cross Hyb Matching Probes None
K04C2.3b 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175958 2 1 NM_066095 173684_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6873049-6873379(+) 100.0 100.0
Public Domain and Genome References
Ensembl K04C2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50677 Hypothetical protein K04C2.3a [Caenorhabditis elegans] ref|NP_498496.1| K04C2.3a [Caenorhabditis elegans] 9.0E-34
blast CAE70094 Hypothetical protein CBG16537 [Caenorhabditis briggsae] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:173684_S_AT
tcactggatctgcttcgcaaggaggaattctgaactcagctcgtcagttcttctctctcg
ctgctccaaaagtcgaaaaaggtaaggaattctcattccgattcctgacatctccactca
gatcgaagccagctgccacagtcaatgccgataacttctacatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTGGATCTGCTTCGCAAGGAGG 487 625 67 Antisense
GATCTGCTTCGCAAGGAGGAATTCT 199 419 73 Antisense
GGAGGAATTCTGAACTCAGCTCGTC 638 515 87 Antisense
TGAACTCAGCTCGTCAGTTCTTCTC 35 575 97 Antisense
TCTCTCGCTGCTCCAAAAGTCGAAA 394 611 120 Antisense
GGAATTCTCATTCCGATTCCTGACA 577 533 152 Antisense
TCCTGACATCTCCACTCAGATCGAA 52 595 169 Antisense
TGACATCTCCACTCAGATCGAAGCC 90 571 172 Antisense
TCTCCACTCAGATCGAAGCCAGCTG 638 607 177 Antisense
CTGCCACAGTCAATGCCGATAACTT 127 237 199 Antisense
GTCAATGCCGATAACTTCTACATGT 671 463 207 Antisense
Sequence Source Affymetrix Proprietary Database