[Home] | [Total List]

[173683_s_at]

Description AU110805 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F09G2.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU110805 /WB_GENE_ID=F09G2.8 /WP=CE09303 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk727d9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 22      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 428.1
(1.7)
P 		332.8
(-3)
P 		352.7
(-2)
P 		453.5
(3)
P 		121
B 517
(3)
P 		335.1
(-3)
P 		358.3
(-2.2)
P 		385.9
(-1.3)
P 		182
C 408.4
(-0.5)
P 		364.7
(-1.7)
P 		320.1
(-3)
P 		529.7
(3)
P 		210
avr 451.2
(2.7) 		344.2
(-3) 		343.7
(-3) 		456.4
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 436
(-2.6)
P 		406.1
(-3)
P 		412.5
(-2.9)
P 		504.9
(-1.6)
P 		583.5
(-0.6)
P 		842.6
(3)
P 		437
B 390.5
(-3)
P 		505.3
(-1.2)
P 		448.4
(-2.1)
P 		452.2
(-2)
P 		546.1
(-0.5)
P 		769.9
(3)
P 		379
C 409.4
(-3)
P 		509.9
(-1.1)
P 		446.6
(-2.3)
P 		440.6
(-2.4)
P 		509.3
(-1.1)
P 		730.5
(3)
P 		321
avr 412
(-3) 		473.8
(-2) 		435.8
(-2.6) 		465.9
(-2.1) 		546.3
(-0.8) 		781
(3) 		369
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 155.9
(3)
P 		72.2
(-2.6)
P 		92.2
(-1.3)
P 		66.4
(-3)
P 		90
B 164.9
(3)
P 		82.8
(-3)
P 		83
(-2.9)
P 		82.2
(-3)
P 		83
C 135.2
(3)
P 		104.8
(-1)
P 		111.6
(-0.1)
P 		89.3
(-3)
P 		46
avr 152
(3) 		86.6
(-2.4) 		95.6
(-1.7) 		79.3
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 80.4
(-3)
P 		144.4
(0.1)
P 		89.8
(-2.5)
P 		128
(-0.7)
P 		176.1
(1.6)
P 		205.1
(3)
P 		125
B 135.9
(-2.1)
P 		168.2
(-1)
P 		108.9
(-3)
P 		119.8
(-2.6)
P 		221.9
(0.8)
P 		287.1
(3)
P 		178
C 151.8
(-0.6)
P 		155.6
(-0.4)
P 		113.7
(-2)
P 		88.6
(-3)
P 		164.8
(-0.1)
P 		244.5
(3)
P 		156
avr 122.7
(-2.2) 		156.1
(-0.8) 		104.1
(-3) 		112.1
(-2.7) 		187.6
(0.5) 		245.6
(3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173683_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25251
Sequence Type Exemplar sequence
Representative Public ID AU110805 NCBI
Target Description AU110805 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F09G2.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU110805 /WB_GENE_ID=F09G2.8 /WP=CE09303 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk727d9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072423 NCBI Caenorhabditis elegans F09G2.8 (F09G2.8) mRNA, complete cds. 11/11 None
SNAP00000025946 ENSEMBL cdna:SNAP chromosome:CEL140:V:7191126:7194473:-1 11/11 None
GENEFINDER00000025953 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7191126:7194379:-1 11/11 None
F09G2.8.1 ENSEMBL cdna:known chromosome:CEL140:V:7191040:7196254:-1 gene:F09G2.8 11/11 None
F09G2.8.2 ENSEMBL cdna:known chromosome:CEL140:V:7191087:7196256:-1 gene:F09G2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7191127-7196252(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09G2.8
Entrez Gene 179105 Entrez gene
SwissProt O17405 EMBL-EBI
WormBase CE09303 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590855_AT similar to phospholipase D3 (predicted) cfa
CANINE_2:CFA.10139.1.S1_AT similar to phospholipase D3 (predicted) cfa
CANINE_2:CFA.21534.1.S1_S_AT similar to phospholipase D3 (predicted) cfa
CANINE_2:CFAAFFX.8975.1.S1_S_AT similar to phospholipase D3 (predicted) cfa
HG-U95AV2:36151_AT phospholipase D family, member 3 hs
HG-U133A:201050_AT phospholipase D family, member 3 hs
HG-U133_PLUS_2:201050_AT phospholipase D family, member 3 hs
HG-FOCUS:201050_AT phospholipase D family, member 3 hs
HG-U133A_2:201050_AT phospholipase D family, member 3 hs
HUGENEFL:U60644_AT phospholipase D family, member 3 hs
U133_X3P:G7110640_3P_X_AT phospholipase D family, member 3 hs
U133_X3P:G7110640_3P_S_AT phospholipase D family, member 3 hs
U133_X3P:201050_3P_AT phospholipase D family, member 3 hs
HG-U133_PLUS_2:243123_AT Phospholipase D family, member 3 hs
HG-U133B:243123_AT Phospholipase D family, member 3 hs
HG-U95D:75376_AT Phospholipase D family, member 3 hs
U133_X3P:HS.257008.0.A1_3P_AT Phospholipase D family, member 3 hs
MU11KSUBA:AF026124_S_AT phospholipase D family, member 3 mm
MG-U74AV2:100607_AT phospholipase D family, member 3 mm
MOE430A:1416013_AT phospholipase D family, member 3 mm
MOUSE430A_2:1416013_AT phospholipase D family, member 3 mm
MOUSE430_2:1416013_AT phospholipase D family, member 3 mm
MU19KSUBC:TC39197_S_AT Phospholipase D family, member 3 (Pld3), mRNA mm
RG-U34C:RC_AI228269_AT phospholipase D3 (predicted) rn
RAE230A:1371961_AT phospholipase D3 (predicted) rn
RAT230_2:1371961_AT phospholipase D3 (predicted) rn
RAE230B:1380661_AT phospholipase D3 (predicted) rn
RAT230_2:1380661_AT phospholipase D3 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504824 F09G2.8 [Caenorhabditis elegans] gb|AAB71325.1| Hypothetical protein F09G2.8 [Caenorhabditis elegans] 0.0
blast CAE72017 Hypothetical protein CBG19099 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 2.3E-5
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 8.6E-5
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 2.3E-5
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 8.6E-5
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 2.3E-5
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 8.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504824.1 1 87-106
F09G2.8.1 1 87-106
F09G2.8.2 1 87-106
SNAP00000025946 1 94-113
GENEFINDER00000025953 1 55-74
Sequence
Target Sequence 
>C. ELEGANS:173683_S_AT
tcggactcctttcaatttctcgagtatggcaaaattgacaatggacggagagcctgccga
gtatttcatatcgagctctcctggaccattcaacccgaaaggccgagagcatgatcttgc
agcaattcaaaaaataatgaaagatgcacgaaaaagcgtgtgcatttctgtcatggatta
tattccatcaacgctttacatgaaaaaatcgaaccgattttggccagaaatcgatgattc
tattcgagacgctgcttatcgtggagtcaatgttcgaatgcttatttcacattgggatca
ctctcgcaaagaaatgataccatttttgaaaagtcttcaaacaataaccgacggacttcc
acgatacaatcgaacagaacacggacaggttcaagtgagaatattcacagttcctccgaa
tgggaaagaaaaaattccatttacacgggtgaatcatgcaaagtatatggttacggagga
tattgcttacattggtacatcaaactggtcaggagactatttcatcagcacagccggagt
cgcgatggtcgttcgtcagccgtcggccacaaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGACTCCTTTCAATTTCTCGAGT 567 603 934 Antisense
GAGAGCCTGCCGAGTATTTCATATC 116 395 981 Antisense
TATTTCATATCGAGCTCTCCTGGAC 485 661 995 Antisense
TCCTGGACCATTCAACCCGAAAGGC 376 587 1012 Antisense
ATTATATTCCATCAACGCTTTACAT 370 13 1110 Antisense
GAGACGCTGCTTATCGTGGAGTCAA 34 395 1179 Antisense
TTCACATTGGGATCACTCTCGCAAA 213 687 1219 Antisense
ATAACCGACGGACTTCCACGATACA 193 25 1277 Antisense
GAATATTCACAGTTCCTCCGAATGG 527 325 1332 Antisense
AGGAGACTATTTCATCAGCACAGCC 188 57 1444 Antisense
TTCGTCAGCCGTCGGCCACAAAACG 82 695 1485 Antisense
Sequence Source Affymetrix Proprietary Database