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[173682_at]

Description AV203598 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M01H9.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203598 /WB_GENE_ID=M01H9.3 /WP=CE12308 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk578e8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 49      6grp_total > 97      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8590
1 2 3 4 range
A 2966.9
(-2.5)
P 		2895.1
(-2.6)
P 		2430.6
(-3)
P 		9305.8
(3)
P 		6875
B 2759.2
(-3)
P 		3051
(-2.7)
P 		2758.6
(-3)
P 		9594.8
(3)
P 		6836
C 2597.5
(-3)
P 		3108.9
(-2.6)
P 		2641.1
(-3)
P 		11020.2
(3)
P 		8423
avr 2774.5
(-2.9) 		3018.3
(-2.7) 		2610.1
(-3) 		9973.6
(3) 		7364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4274
1 2 3 4 5 6 range
A 2707.5
(-2.1)
P 		2110.3
(-3)
P 		2864.1
(-1.9)
P 		2719.7
(-2.1)
P 		6199.9
(3)
P 		5511.4
(2)
P 		4090
B 2554.6
(-2.6)
P 		2254.8
(-3)
P 		3182.8
(-1.6)
P 		4091.5
(-0.3)
P 		4914.7
(0.9)
P 		6312.5
(3)
P 		4058
C 2477.4
(-2.3)
P 		2038.5
(-3)
P 		2439
(-2.4)
P 		3643.5
(-0.6)
P 		5350.8
(2)
P 		5996.4
(3)
P 		3958
avr 2579.8
(-2.3) 		2134.5
(-3) 		2828.6
(-1.9) 		3484.9
(-0.9) 		5488.5
(2.3) 		5940.1
(3) 		3806
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1416
1 2 3 4 range
A 1080.2
(0.7)
P 		628.4
(-3)
P 		635.4
(-2.9)
P 		1362.2
(3)
P 		734
B 879.9
(-2)
P 		753.5
(-2.5)
P 		639.2
(-3)
P 		2044.7
(3)
P 		1406
C 859.8
(-3)
P 		893.8
(-2.8)
P 		920.5
(-2.6)
P 		1858.2
(3)
P 		998
avr 940
(-1.8) 		758.6
(-2.8) 		731.7
(-3) 		1755
(3) 		1023

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1855
1 2 3 4 5 6 range
A 499.1
(-3)
P 		750.5
(-1.9)
P 		623.7
(-2.5)
P 		689.8
(-2.2)
P 		1870.9
(3)
P 		1341.9
(0.7)
P 		1372
B 888.9
(-2.5)
P 		750.5
(-3)
P 		772.9
(-2.9)
P 		1083.7
(-1.8)
P 		1996.8
(1.7)
P 		2353.9
(3)
P 		1603
C 918.3
(-1.7)
P 		622
(-3)
P 		620.8
(-3)
P 		732.7
(-2.5)
P 		1731.5
(1.8)
P 		2007.4
(3)
P 		1387
avr 768.8
(-2.5) 		707.7
(-2.8) 		672.5
(-3) 		835.4
(-2.2) 		1866.4
(2.8) 		1901.1
(3) 		1229
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25024
Sequence Type Exemplar sequence
Representative Public ID AV203598 NCBI
Target Description AV203598 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M01H9.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203598 /WB_GENE_ID=M01H9.3 /WP=CE12308 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk578e8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068174(11), NM_068175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068174 NCBI Caenorhabditis elegans M01H9.3a (M01H9.3) mRNA, complete cds. 11/11 None
NM_068175 NCBI Caenorhabditis elegans M01H9.3b (M01H9.3) mRNA, complete cds. 11/11 None
M01H9.3a.1 ENSEMBL cdna:known chromosome:CEL140:IV:4468527:4477054:-1 gene:M01H9.3 11/11 None
M01H9.3b ENSEMBL cdna:known chromosome:CEL140:IV:4468537:4470425:-1 gene:M01H9.3 11/11 None
M01H9.3a.2 ENSEMBL cdna:known chromosome:CEL140:IV:4468539:4477052:-1 gene:M01H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177215 3 2 NM_001028135 182846_s_at (11)
NM_068174 173682_at (11), 182846_s_at (11)
NM_068175 173682_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4468576-4470741(-) 100.0 100.0
Public Domain and Genome References
Ensembl M01H9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77617 Hypothetical protein M01H9.3a [Caenorhabditis elegans] ref|NP_500575.1| M01H9.3a [Caenorhabditis elegans] 1.0E-119
blast CAE58529 Hypothetical protein CBG01684 [Caenorhabditis briggsae] 1.0E-111
blast AAV34789 Hypothetical protein M01H9.3c [Caenorhabditis elegans] ref|NP_001023306.1| M01H9.3c [Caenorhabditis elegans] 7.0E-89
blast AAK77618 Hypothetical protein M01H9.3b [Caenorhabditis elegans] ref|NP_500576.1| M01H9.3b [Caenorhabditis elegans] 1.0E-74
Sequence
Target Sequence 
>C. ELEGANS:173682_AT
taagagcccccattcaggatgtaataatttatgttgatttatttctcgttttcccctctt
ggattatcattttgatgattattatcaaatttcccactcaaatgtttgtttctgttactt
ctctcccccaccctttccagaaccctccggttctctctgtaaatatgcccagtcgtgcag
agttctcttggatctgcaatatcgttgtcaactagagtagctcacgcttttcccatactg
gttccgtcaaacaaacaaaaaaaccatggattgtatatagcccattctttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGAGCCCCCATTCAGGATGTAAT 529 637 630 Antisense
TATGTTGATTTATTTCTCGTTTTCC 182 655 659 Antisense
GTTTTCCCCTCTTGGATTATCATTT 519 447 677 Antisense
ATCAAATTTCCCACTCAAATGTTTG 418 25 713 Antisense
AATGTTTGTTTCTGTTACTTCTCTC 35 165 730 Antisense
TCCGGTTCTCTCTGTAAATATGCCC 688 593 775 Antisense
TATGCCCAGTCGTGCAGAGTTCTCT 423 657 793 Antisense
GAGTTCTCTTGGATCTGCAATATCG 49 399 809 Antisense
AACTAGAGTAGCTCACGCTTTTCCC 303 137 839 Antisense
TTTCCCATACTGGTTCCGTCAAACA 673 667 858 Antisense
GGATTGTATATAGCCCATTCTTTAA 169 509 897 Antisense
Sequence Source Affymetrix Proprietary Database