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[173680_at]

Description AV196887 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T02C5.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196887 /WB_GENE_ID=T02C5.3 /WP=CE04850 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk659f7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_high_8_8 > 53      6grp_highest_nonorm > 85      6grp_total > 57      4grp_total > 58      6grp_highest_sub > Cu      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 672
1 2 3 4 range
A 747.4
(-0.4)
P 		964.7
(1.7)
P 		1105.7
(3)
P 		475.1
(-3)
P 		631
B 731.7
(-1.2)
P 		1146.7
(3)
P 		936.8
(0.9)
P 		547.7
(-3)
P 		599
C 623.8
(-2.4)
P 		1057.5
(3)
P 		1057.7
(3)
P 		577.6
(-3)
M 		480
avr 701
(-1.1) 		1056.3
(3) 		1033.4
(2.7) 		533.5
(-3) 		523

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 844
1 2 3 4 5 6 range
A 1118.1
(2.9)
P 		1020.6
(1.6)
P 		659.6
(-3)
P 		666.6
(-2.9)
P 		811.6
(-1.1)
P 		1128.7
(3)
P 		469
B 890.6
(0)
P 		808.5
(-0.8)
P 		597.8
(-3)
P 		877.9
(-0.1)
P 		623
(-2.7)
P 		1176.6
(3)
P 		579
C 711.9
(-1.8)
P 		783.5
(-1.3)
P 		667.8
(-2.1)
P 		614.8
(-2.5)
P 		547.6
(-3)
P 		1391.9
(3)
P 		844
avr 906.9
(-0.3) 		870.9
(-0.7) 		641.7
(-3) 		719.8
(-2.2) 		660.7
(-2.8) 		1232.4
(3) 		591
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 272.1
(2.5)
P 		209.4
(0.8)
P 		289.1
(3)
P 		69.5
(-3)
P 		220
B 233.3
(1.2)
P 		283.2
(3)
P 		217.1
(0.6)
P 		116.7
(-3)
P 		167
C 206.5
(-0.6)
P 		304
(1.6)
P 		368.6
(3)
P 		97.4
(-3)
M 		271
avr 237.3
(1.3) 		265.5
(2.2) 		291.6
(3) 		94.5
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 206.1
(-1.3)
P 		363
(3)
P 		143.6
(-3)
P 		169.1
(-2.3)
P 		244.9
(-0.2)
P 		274.8
(0.6)
P 		219
B 309.9
(0.4)
P 		269.1
(-0.5)
P 		145.2
(-3)
P 		232.5
(-1.2)
P 		253.1
(-0.8)
P 		438.7
(3)
P 		294
C 263.9
(-0.5)
P 		239.1
(-1)
P 		170
(-2.2)
P 		123.6
(-3)
P 		177.2
(-2.1)
P 		466
(3)
P 		342
avr 260
(-0.3) 		290.4
(0.4) 		152.9
(-3) 		175.1
(-2.4) 		225.1
(-1.2) 		393.2
(3) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26178
Sequence Type Exemplar sequence
Representative Public ID AV196887 NCBI
Target Description AV196887 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T02C5.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196887 /WB_GENE_ID=T02C5.3 /WP=CE04850 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk659f7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076078 NCBI Caenorhabditis elegans ImmunoGlobulin-like Cell adhesion Molecule family member (igcm-3) (igcm-3) mRNA, complete cds. 11/11 None
T02C5.3 ENSEMBL cdna:known chromosome:CEL140:X:2698251:2705860:-1 gene:T02C5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2698278-2705851(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol igcm-3
Ensembl T02C5.3
Entrez Gene 180569 Entrez gene
SwissProt Q22096 EMBL-EBI
WormBase CE34589 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36866 Hypothetical protein T02C5.3 [Caenorhabditis elegans] ref|NP_508479.2| ImmunoGlobulin-like Cell adhesion Molecule family member (igcm-3) [Caenorhabditis elegans] 0.0
blast CAE58842 Hypothetical protein CBG02061 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.024
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0020
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508479.2 1 507-529
T02C5.3 1 507-529
Sequence
Target Sequence 
>C. ELEGANS:173680_AT
cagtctgtcgtctagctaatctatgtgtacatccactatcctccgtgttacctgtttttt
aaaaaccgtattgaaaaagttttaatggccatatttgaaattttaattacaaatgtacct
ttctgcgttttttctttctttttcatttttcactttcccttctagaaccatcccttgttt
gattttttcttcgagcattgtcagccattcatgcaacttcgggtattatatgctatctct
atcacctctcatttccctccacttaaatttcgtggcctcaggcggtgttatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCTGTCGTCTAGCTAATCTATG 273 207 1877 Antisense
TCTATGTGTACATCCACTATCCTCC 317 615 1896 Antisense
TACAAATGTACCTTTCTGCGTTTTT 692 641 1984 Antisense
CTTCTAGAACCATCCCTTGTTTGAT 246 215 2035 Antisense
TTTGATTTTTTCTTCGAGCATTGTC 397 667 2054 Antisense
TCTTCGAGCATTGTCAGCCATTCAT 345 617 2064 Antisense
AGCCATTCATGCAACTTCGGGTATT 145 85 2079 Antisense
ATTATATGCTATCTCTATCACCTCT 691 13 2101 Antisense
TCATTTCCCTCCACTTAAATTTCGT 529 615 2125 Antisense
CTTAAATTTCGTGGCCTCAGGCGGT 589 1 2138 Antisense
TCGTGGCCTCAGGCGGTGTTATCAC 103 607 2146 Antisense
Sequence Source Affymetrix Proprietary Database