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[173679_s_at]

Description AV194174 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C27H6.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194174 /WB_GENE_ID=C27H6.4 /WP=CE08428 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk626b6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 37      6grp_total > 73      4grp_total > 32      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1855
1 2 3 4 range
A 3229.8
(-3)
P 		3923.1
(-0)
P 		4627.4
(3)
P 		4464.6
(2.3)
P 		1398
B 3462.5
(-3)
P 		3619
(-2.4)
P 		5078.9
(3)
P 		4792.6
(1.9)
P 		1616
C 3223.9
(-3)
P 		3425.1
(-1.8)
P 		4268.4
(3)
P 		4146.4
(2.3)
P 		1045
avr 3305.4
(-3) 		3655.7
(-1.4) 		4658.2
(3) 		4467.9
(2.2) 		1353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2411
1 2 3 4 5 6 range
A 3486.4
(-3)
P 		4353.6
(-0.2)
P 		4635.3
(0.7)
P 		5363.3
(3)
P 		4501.5
(0.2)
P 		4903.5
(1.5)
P 		1877
B 3441.1
(-3)
P 		4424.3
(0.3)
P 		4507.3
(0.6)
P 		4542.5
(0.7)
P 		5216
(3)
P 		4361.3
(0.1)
P 		1775
C 3650.2
(-3)
P 		3994
(-2.1)
P 		5852.2
(3)
P 		4284.5
(-1.3)
P 		4923.4
(0.5)
P 		5353.2
(1.6)
P 		2202
avr 3525.9
(-3) 		4257.3
(-0) 		4998.3
(3) 		4730.1
(1.9) 		4880.3
(2.5) 		4872.7
(2.5) 		1472
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 834
1 2 3 4 range
A 1176
(2.6)
P 		851.6
(-0.9)
P 		1209.7
(3)
P 		653.5
(-3)
P 		556
B 1104.2
(1.5)
P 		893.8
(-3)
P 		1176.9
(3)
P 		1021.3
(-0.3)
P 		283
C 1067.2
(-0.2)
P 		984.7
(-0.8)
P 		1487.7
(3)
P 		699.1
(-3)
P 		789
avr 1115.8
(0.9) 		910
(-1.6) 		1291.4
(3) 		791.3
(-3) 		500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1477
1 2 3 4 5 6 range
A 642.7
(-3)
P 		1548.4
(3)
P 		1009.5
(-0.6)
P 		1360.3
(1.8)
P 		1358.3
(1.7)
P 		1193.8
(0.7)
P 		906
B 1197.3
(-2.4)
P 		1472.7
(-0.8)
P 		1094.5
(-3)
P 		1203.2
(-2.4)
P 		2119.2
(3)
P 		1626.3
(0.1)
P 		1025
C 1353
(0.2)
P 		1218.7
(-0.7)
P 		1489.5
(1)
P 		861.6
(-3)
P 		1593.1
(1.7)
P 		1792
(3)
P 		930
avr 1064.3
(-3) 		1413.3
(0.3) 		1197.8
(-1.7) 		1141.7
(-2.3) 		1690.2
(3) 		1537.4
(1.5) 		626
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173679_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25238
Sequence Type Exemplar sequence
Representative Public ID AV194174 NCBI
Target Description AV194174 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C27H6.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194174 /WB_GENE_ID=C27H6.4 /WP=CE08428 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk626b6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171522(11), NM_171523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171522 NCBI Caenorhabditis elegans C27H6.4b (C27H6.4) mRNA, complete cds. 11/11 None
NM_171523 NCBI Caenorhabditis elegans C27H6.4a (C27H6.4) mRNA, complete cds. 11/11 None
SNAP00000032974 ENSEMBL cdna:SNAP chromosome:CEL140:V:9986646:9987376:-1 11/11 None
GENEFINDER00000032980 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9986646:9988859:-1 11/11 None
C27H6.4b ENSEMBL cdna:known chromosome:CEL140:V:9986512:9988820:-1 gene:C27H6.4 11/11 None
C27H6.4a ENSEMBL cdna:known chromosome:CEL140:V:9986646:9988233:-1 gene:C27H6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9986534-9988140(-) 100.0 100.0
Public Domain and Genome References
Ensembl C27H6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44090 Hypothetical protein C27H6.4b [Caenorhabditis elegans] ref|NP_741608.1| C27H6.4b [Caenorhabditis elegans] 0.0
blast CAE72294 Hypothetical protein CBG19424 [Caenorhabditis briggsae] 1.0E-153
blast CAB02796 Hypothetical protein C27H6.4a [Caenorhabditis elegans] ref|NP_741609.1| C27H6.4a [Caenorhabditis elegans] 1.0E-146
blast CAB02796 Hypothetical protein C27H6.4a [Caenorhabditis elegans] ref|NP_741609.1| C27H6.4a [Caenorhabditis elegans] 1.0E-143
blast CAD44090 Hypothetical protein C27H6.4b [Caenorhabditis elegans] ref|NP_741608.1| C27H6.4b [Caenorhabditis elegans] 1.0E-143
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032980 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:173679_S_AT
tcgctgggctgcattgatgtcgggaaaggtcaccgagtaccttggaaccaaggaaaagat
tgaggagggaaaacactgtaaggaatatctcgatcgtgccatctctatccagccaaagga
agatgctcttcttcatctgcgtggtcgttgggctctttcagtagccaatctttcgtggtt
tgaacgcaaagctgctgcacttctgtactctgagccaccaactgccactgtcgaggaggc
tatcgccgacttccaagcagctcatgaaatcaatccagactggattgaaaacacggttta
cctcggaaaagctcttcatcaaaagggagacaaggctgctgccaagccattctttgagca
ggctctcaaaatcacccctaccaacgataacgagaaagagcttctcaccgaagccaaggg
cctgtgctcgaagtgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTGGGCTGCATTGATGTCGGGA 389 583 394 Antisense
GGTCACCGAGTACCTTGGAACCAAG 110 503 421 Antisense
CTCTTTCAGTAGCCAATCTTTCGTG 38 231 546 Antisense
GAACGCAAAGCTGCTGCACTTCTGT 544 345 575 Antisense
CACCAACTGCCACTGTCGAGGAGGC 299 201 609 Antisense
TGTCGAGGAGGCTATCGCCGACTTC 425 557 622 Antisense
GTTTACCTCGGAAAAGCTCTTCATC 591 449 689 Antisense
CTGCTGCCAAGCCATTCTTTGAGCA 12 237 729 Antisense
TCACCCCTACCAACGATAACGAGAA 617 625 765 Antisense
GAGCTTCTCACCGAAGCCAAGGGCC 445 387 791 Antisense
CCAAGGGCCTGTGCTCGAAGTGTTA 40 275 807 Antisense
Sequence Source Affymetrix Proprietary Database