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[173676_s_at]

Description AV195437 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F08C6.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195437 /WB_GENE_ID=F08C6.6 /WP=CE27925 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk641g9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 35      6grp_total > 50      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3938
1 2 3 4 range
A 4698.1
(1.4)
P 		5715.8
(3)
P 		4908.7
(1.7)
P 		1843.8
(-3)
P 		3872
B 4888.6
(2.8)
P 		4605.1
(2.3)
P 		4970.7
(3)
P 		1824.2
(-3)
P 		3147
C 4469.9
(2.9)
P 		4511.3
(3)
P 		4468.6
(2.9)
P 		1777.9
(-3)
P 		2733
avr 4685.5
(2.5) 		4944.1
(3) 		4782.7
(2.7) 		1815.3
(-3) 		3129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1899
1 2 3 4 5 6 range
A 3405
(-0.7)
P 		3173.2
(-1.4)
P 		3771.6
(0.6)
P 		4486.1
(3)
P 		2766
(-2.8)
P 		2709.4
(-3)
P 		1777
B 2974.9
(-2)
P 		3347.9
(-0.7)
P 		4460
(3)
P 		3894
(1.1)
P 		2813.6
(-2.5)
P 		2678.1
(-3)
P 		1782
C 2800.6
(-2.2)
P 		3282.3
(-0.5)
P 		4227.4
(3)
P 		3956.6
(2)
P 		2796.6
(-2.2)
P 		2587.4
(-3)
P 		1640
avr 3060.2
(-1.4) 		3267.8
(-0.6) 		4153
(3) 		4112.2
(2.8) 		2792.1
(-2.5) 		2658.3
(-3) 		1495
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1441
1 2 3 4 range
A 1710.6
(3)
P 		1240.8
(1)
P 		1283.2
(1.2)
P 		269.9
(-3)
P 		1441
B 1558.9
(3)
P 		1137.4
(0.8)
P 		1151.8
(0.9)
P 		388.7
(-3)
P 		1170
C 1479.7
(2.6)
P 		1297
(1.8)
P 		1557.4
(3)
P 		299.8
(-3)
P 		1258
avr 1583.1
(3) 		1225.1
(1.3) 		1330.8
(1.8) 		319.5
(-3) 		1264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 515
1 2 3 4 5 6 range
A 627.7
(-3)
P 		1128.6
(2.9)
P 		821.4
(-0.7)
P 		1137.8
(3)
P 		834.6
(-0.6)
P 		659.6
(-2.6)
P 		510
B 1035.1
(-1.5)
P 		1114.4
(1.8)
P 		1083
(0.5)
P 		1031.4
(-1.6)
P 		1143.1
(3)
P 		998.6
(-3)
P 		145
C 1038.1
(2.2)
P 		1001.5
(1.4)
P 		1075.9
(3)
P 		795.7
(-3)
P 		905
(-0.7)
P 		866.2
(-1.5)
P 		280
avr 900.3
(-1.5) 		1081.5
(3) 		993.4
(0.8) 		988.3
(0.7) 		960.9
(-0) 		841.5
(-3) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173676_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25948
Sequence Type Exemplar sequence
Representative Public ID AV195437 NCBI
Target Description AV195437 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F08C6.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195437 /WB_GENE_ID=F08C6.6 /WP=CE27925 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk641g9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076882 NCBI Caenorhabditis elegans F08C6.6 (F08C6.6) mRNA, complete cds. 11/11 None
SNAP00000044578 ENSEMBL cdna:SNAP chromosome:CEL140:X:7568211:7569663:-1 11/11 None
GENEFINDER00000044589 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7568211:7569663:-1 11/11 None
F08C6.6 ENSEMBL cdna:known chromosome:CEL140:X:7568103:7569665:-1 gene:F08C6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7568210-7569440(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08C6.6
Entrez Gene 181019 Entrez gene
SwissProt Q19202 EMBL-EBI
WormBase CE27925 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.9259.1.S1_AT similar to Ca2+-dependent endoplasmic reticulum nucleoside diphosphatase cfa
DROSOPHILA_2:1636403_AT dm
DROSGENOME1:154530_AT dm
CHICKEN:GGAAFFX.12501.1.S1_AT calcium activated nucleotidase 1 gga
CHICKEN:GGAAFFX.7506.1.S1_S_AT calcium activated nucleotidase 1 gga
HU35KSUBA:RC_AA128486_AT calcium activated nucleotidase 1 hs
U133_X3P:HS2.8859.2.S1_3P_S_AT calcium activated nucleotidase 1 hs
U133_X3P:HS.8859.0.S1_3P_S_AT calcium activated nucleotidase 1 hs
HG-U133_PLUS_2:1554327_A_AT calcium activated nucleotidase 1 hs
HG-U133A_2:221732_AT calcium activated nucleotidase 1 hs
HG-U133_PLUS_2:221732_AT calcium activated nucleotidase 1 hs
HG-U133A:221732_AT calcium activated nucleotidase 1 hs
HG-U133A_2:46323_AT calcium activated nucleotidase 1 hs
HG-U133_PLUS_2:46323_AT calcium activated nucleotidase 1 hs
HG-U133A:46323_AT calcium activated nucleotidase 1 hs
HG-U95B:46323_AT calcium activated nucleotidase 1 hs
HG-U95E:75121_AT calcium activated nucleotidase 1 hs
MOE430A:1421476_A_AT calcium activated nucleotidase 1 mm
MOUSE430_2:1421476_A_AT calcium activated nucleotidase 1 mm
MOUSE430A_2:1421476_A_AT calcium activated nucleotidase 1 mm
MOUSE430A_2:1451688_S_AT calcium activated nucleotidase 1 mm
MOUSE430_2:1451688_S_AT calcium activated nucleotidase 1 mm
MOE430A:1451688_S_AT calcium activated nucleotidase 1 mm
MU11KSUBA:AA683909_G_AT calcium activated nucleotidase 1 mm
MU11KSUBA:AA683909_AT calcium activated nucleotidase 1 mm
MG-U74AV2:103515_AT calcium activated nucleotidase 1 mm
MG-U74BV2:110741_AT calcium activated nucleotidase 1 mm
MG-U74AV2:162415_F_AT calcium activated nucleotidase 1 mm
MOE430A:1433709_AT calcium activated nucleotidase 1 mm
MOUSE430A_2:1433709_AT calcium activated nucleotidase 1 mm
MOUSE430_2:1433709_AT calcium activated nucleotidase 1 mm
MU19KSUBC:TC37174_AT Calcium activated nucleotidase 1, mRNA (cDNA clone MGC:25875 IMAGE:4208801) mm
RG-U34B:RC_AA946291_AT calcium activated nucleotidase 1 rn
RAE230A:1389588_AT calcium activated nucleotidase 1 rn
RAT230_2:1389588_AT calcium activated nucleotidase 1 rn
RAE230B:1396446_AT calcium activated nucleotidase 1 rn
RAT230_2:1396446_AT calcium activated nucleotidase 1 rn
Protein Similarities
Method ID Description E-Value
blast AAA68725 Hypothetical protein F08C6.6 [Caenorhabditis elegans] ref|NP_509283.1| F08C6.6 [Caenorhabditis elegans] 0.0
blast CAE70242 Hypothetical protein CBG16731 [Caenorhabditis briggsae] 0.0
blast CAG15247 apyrase [Xenopus laevis] gb|AAH41215.1| MGC52693 protein [Xenopus laevis] 9.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR009283 EMBL-EBI Apyrase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509283.1 1 7-29
F08C6.6 1 7-29
SNAP00000044578 1 7-29
GENEFINDER00000044589 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:173676_S_AT
acttccctgggtattactgaacgatgggccaggaaacgtcgtgaagggatttaaaggaga
atggatcactgttaaggataccgaattgattgttggaggattgggaaaagaatggacgac
cactgacggagtttatgtgaacgatcacccaatgtgggtgaagcatgtctctgctcacgg
agccgttcatcacgaaaactggaaggatgtatatatccgcgttcgtagagctgctgggat
cgaatatcccggatacatgattcacgaagctgttcaatggtctgcaattcacagaaaatg
gttcttccttccacgtagaatgtcaaatgagaagtattctgaggcggaggacgagaaccg
cggaacaaacgttcttgtgattggaaatgaagagttgactgattttgaggttgtgcgagt
aggatcggagaataacaaatccagagggtttgctgctttccaatttgtgccaaacactca
tcaccagctcatcgttgccatcaagtcggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCCCTGGGTATTACTGAACGAT 502 101 274 Antisense
GATGGGCCAGGAAACGTCGTGAAGG 174 409 296 Antisense
ATGGACGACCACTGACGGAGTTTAT 160 41 385 Antisense
GTGGGTGAAGCATGTCTCTGCTCAC 303 489 427 Antisense
TGCTCACGGAGCCGTTCATCACGAA 196 581 445 Antisense
ATATATCCGCGTTCGTAGAGCTGCT 470 19 484 Antisense
AGCTGTTCAATGGTCTGCAATTCAC 638 79 541 Antisense
GTTCTTCCTTCCACGTAGAATGTCA 179 297 574 Antisense
AATCCAGAGGGTTTGCTGCTTTCCA 167 167 711 Antisense
GCTGCTTTCCAATTTGTGCCAAACA 159 295 725 Antisense
GCTCATCGTTGCCATCAAGTCGGAG 511 301 760 Antisense
Sequence Source Affymetrix Proprietary Database