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[173673_s_at]

Description AV202366 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W08E3.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV202366 /WB_GENE_ID=W08E3.2 /WP=CE26028 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk549e6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 544
1 2 3 4 range
A 724.9
(1.8)
P 		822.5
(3)
P 		703.4
(1.6)
P 		323
(-3)
P 		500
B 758.6
(1)
P 		804.1
(1.8)
P 		866.6
(3)
P 		541.6
(-3)
P 		325
C 669.2
(0.5)
P 		618.2
(-0.5)
P 		802.4
(3)
P 		485
(-3)
P 		317
avr 717.6
(1.7) 		748.3
(2.3) 		790.8
(3) 		449.9
(-3) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 699
1 2 3 4 5 6 range
A 704.2
(2.7)
P 		720.7
(3)
P 		511.5
(-0.7)
P 		495.1
(-0.9)
P 		457.5
(-1.6)
P 		377.1
(-3)
P 		344
B 771.5
(3)
P 		677.6
(1.7)
P 		623.4
(1)
P 		474.8
(-1)
P 		331.3
(-3)
P 		348.3
(-2.8)
P 		440
C 1013.5
(3)
P 		656.9
(-0.1)
P 		541.7
(-1.1)
P 		370.5
(-2.5)
P 		499.7
(-1.4)
P 		314.6
(-3)
P 		699
avr 829.7
(3) 		685.1
(1.2) 		558.9
(-0.4) 		446.8
(-1.8) 		429.5
(-2) 		346.7
(-3) 		483
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 263.9
(3)
P 		178.5
(0.6)
P 		183.9
(0.8)
P 		47.3
(-3)
P 		217
B 241.9
(3)
P 		198.6
(0.9)
P 		200.8
(1.1)
P 		115.4
(-3)
P 		127
C 221.5
(1.2)
P 		177.7
(-0.1)
P 		279.7
(3)
P 		81.8
(-3)
P 		198
avr 242.4
(3) 		184.9
(0.9) 		221.5
(2.2) 		81.5
(-3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 129.8
(-1.6)
P 		256.3
(3)
P 		111.4
(-2.3)
P 		125.6
(-1.8)
P 		138.1
(-1.3)
P 		91.8
(-3)
P 		165
B 268.4
(3)
P 		225.6
(1.2)
P 		151.4
(-1.9)
P 		125.7
(-3)
P 		134.6
(-2.6)
P 		129.9
(-2.8)
P 		143
C 375.7
(3)
P 		200.5
(-0.5)
P 		137.9
(-1.7)
P 		74.5
(-3)
P 		161.7
(-1.3)
P 		105.3
(-2.4)
P 		301
avr 258
(3) 		227.5
(1.8) 		133.6
(-2) 		108.6
(-3) 		144.8
(-1.5) 		109
(-3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173673_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22666
Sequence Type Exemplar sequence
Representative Public ID AV202366 NCBI
Target Description AV202366 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W08E3.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV202366 /WB_GENE_ID=W08E3.2 /WP=CE26028 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk549e6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060945(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060945 NCBI Caenorhabditis elegans W08E3.2 (W08E3.2) mRNA, complete cds. 11/11 None
SNAP00000016267 ENSEMBL cdna:SNAP chromosome:CEL140:I:13341796:13342823:-1 11/11 None
GENEFINDER00000016273 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13341796:13342823:-1 11/11 None
W08E3.2 ENSEMBL cdna:known chromosome:CEL140:I:13341564:13344262:-1 gene:W08E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13341727-13344189(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08E3.2
Entrez Gene 173203 Entrez gene
SwissProt P91916 EMBL-EBI
WormBase CE26028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB97236 Hypothetical protein W08E3.2 [Caenorhabditis elegans] emb|CAB07130.2| Hypothetical protein W08E3.2 [Caenorhabditis elegans] ref|NP_493346.1| W08E3.2 [Caenorhabditis elegans] 0.0
blast CAE73026 Hypothetical protein CBG20393 [Caenorhabditis briggsae] 1.0E-118
blast CAB97236 Hypothetical protein W08E3.2 [Caenorhabditis elegans] emb|CAB07130.2| Hypothetical protein W08E3.2 [Caenorhabditis elegans] ref|NP_493346.1| W08E3.2 [Caenorhabditis elegans] 3.0E-94
blast CAE73026 Hypothetical protein CBG20393 [Caenorhabditis briggsae] 1.0E-42
blast CAD88256 MLN51 protein [Danio rerio] ref|NP_991279.1| cancer susceptibility candidate 3 [Danio rerio] 4.0E-11
Sequence
Target Sequence 
>C. ELEGANS:173673_S_AT
caccgtgacacgtggcactggaggatacggtagaactggtgcgatcagaggaggtgttcg
aggatctggagcaccaagatatggagtaagaagaactgatacttcagaacaaagtgaagg
gtatcagcgaggaggatccggtacggattactcatcacctcgaccaaaccatcaatccga
tcgttcctatcaagcatcttcaacaaacttccgtggtggatcccatcctcatccatcagc
caatgtctatccatcatcacggggaggttattcctcaaacaatgctgattatgcttcacg
tggcggtggcggctaccacggtccaccacaacatcacaataatcaccataaccaccaaca
gaagcgtttcgtgcagggacccccaccaccgatggttgccgtcggtgttgtgcccggcaa
cgtagtcccacccccacaaatgacacgcggctccacacacggaggaaatcaacataatgg
aggaggtggtggtggtagtggtggacagcagaggatccgacagcccaccgatgttgtgta
ctttgatccccagcagcaacagggaacccgccaacttcctccacgctctaaaaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGTGACACGTGGCACTGGAGGA 137 201 1138 Antisense
ATCCGGTACGGATTACTCATCACCT 359 37 1273 Antisense
GACCAAACCATCAATCCGATCGTTC 413 383 1299 Antisense
CGATCGTTCCTATCAAGCATCTTCA 342 249 1315 Antisense
GCATCTTCAACAAACTTCCGTGGTG 106 309 1331 Antisense
CATCCATCAGCCAATGTCTATCCAT 566 211 1367 Antisense
TGATTATGCTTCACGTGGCGGTGGC 237 555 1423 Antisense
ACCACCAACAGAAGCGTTTCGTGCA 384 85 1488 Antisense
TGGACAGCAGAGGATCCGACAGCCC 197 547 1639 Antisense
GACAGCCCACCGATGTTGTGTACTT 635 365 1656 Antisense
CAACTTCCTCCACGCTCTAAAAAGG 314 189 1709 Antisense
Sequence Source Affymetrix Proprietary Database