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[173672_s_at]

Description AV186132 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C06A5.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV186132 /WB_GENE_ID=C06A5.8 /WP=CE07955 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk495e7 : 5prime end, single read.
Cluster 6grp_total > 97      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 39.1
(-1.6)
A 		23.5
(-3)
A 		75.5
(1.5)
A 		92.4
(3)
A 		69
B 36.9
(-3)
A 		78.7
(0)
A 		46.4
(-2.3)
A 		120.5
(3)
P 		84
C 4.1
(-3)
A 		83.9
(0.6)
A 		63.2
(-0.3)
A 		136.9
(3)
P 		133
avr 26.7
(-3) 		62
(-0.6) 		61.7
(-0.7) 		116.6
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 101.7
(-2)
A 		14.8
(-3)
A 		13.7
(-3)
A 		150.5
(-1.5)
M 		355
(0.7)
P 		563
(3)
P 		549
B 5.6
(-3)
A 		40.1
(-2.6)
A 		109.6
(-1.8)
A 		153.1
(-1.3)
A 		367.2
(1.2)
P 		524
(3)
P 		518
C 4.9
(-3)
A 		88.4
(-2.2)
A 		66.2
(-2.4)
A 		136.1
(-1.7)
P 		302.2
(-0)
P 		601.3
(3)
P 		596
avr 37.4
(-3) 		47.8
(-2.9) 		63.2
(-2.7) 		146.6
(-1.8) 		341.5
(0.5) 		562.8
(3) 		525
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 14.2
(0.7)
A 		5.1
(-3)
A 		19.7
(3)
A 		13.5
(0.5)
A 		15
B 11.8
(-2.6)
A 		19.4
(0.5)
A 		10.8
(-3)
A 		25.7
(3)
P 		15
C 1.4
(-3)
A 		24.1
(3)
A 		22
(2.4)
A 		23.1
(2.7)
P 		23
avr 9.1
(-3) 		16.2
(0.6) 		17.5
(1.3) 		20.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 18.7
(-2.3)
A 		5.3
(-2.9)
A 		3
(-3)
A 		38.2
(-1.4)
M 		107.1
(1.7)
P 		137.1
(3)
P 		134
B 1.9
(-3)
A 		13.3
(-2.6)
A 		26.6
(-2.2)
A 		40.5
(-1.8)
A 		149.2
(1.6)
P 		195.4
(3)
P 		194
C 1.8
(-3)
A 		27
(-2.2)
A 		16.9
(-2.5)
A 		27.4
(-2.2)
P 		97.8
(-0.1)
P 		201.3
(3)
P 		200
avr 7.5
(-3) 		15.2
(-2.7) 		15.5
(-2.7) 		35.4
(-2) 		118
(0.9) 		177.9
(3) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173672_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22861
Sequence Type Exemplar sequence
Representative Public ID AV186132 NCBI
Target Description AV186132 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C06A5.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV186132 /WB_GENE_ID=C06A5.8 /WP=CE07955 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk495e7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059336(11), NM_182037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059336 NCBI Caenorhabditis elegans C06A5.8a (C06A5.8) mRNA, complete cds. 11/11 None
NM_182037 NCBI Caenorhabditis elegans C06A5.8b (C06A5.8) mRNA, complete cds. 11/11 None
SNAP00000012792 ENSEMBL cdna:SNAP chromosome:CEL140:I:6016361:6018961:-1 11/11 None
GENEFINDER00000012796 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6016361:6017653:-1 11/11 None
C06A5.8a ENSEMBL cdna:known chromosome:CEL140:I:6016240:6017664:-1 gene:C06A5.8 11/11 None
C06A5.8b ENSEMBL cdna:known chromosome:CEL140:I:6016361:6017564:-1 gene:C06A5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6016361-6017654(-) 92.25 100.0
Public Domain and Genome References
Ensembl C06A5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52441 Hypothetical protein C06A5.8a [Caenorhabditis elegans] ref|NP_491737.1| C06A5.8a [Caenorhabditis elegans] 1.0E-130
blast AAB52441 Hypothetical protein C06A5.8a [Caenorhabditis elegans] ref|NP_491737.1| C06A5.8a [Caenorhabditis elegans] 1.0E-114
blast AAO38676 Hypothetical protein C06A5.8b [Caenorhabditis elegans] ref|NP_871837.1| C06A5.8b [Caenorhabditis elegans] 2.0E-97
blast AAB52441 Hypothetical protein C06A5.8a [Caenorhabditis elegans] ref|NP_491737.1| C06A5.8a [Caenorhabditis elegans] 2.0E-97
blast AAO38676 Hypothetical protein C06A5.8b [Caenorhabditis elegans] ref|NP_871837.1| C06A5.8b [Caenorhabditis elegans] 3.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.6E-8
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.8E-10
Sequence
Target Sequence 
>C. ELEGANS:173672_S_AT
ttcggcgtatttggagtgcccgtcgtgtcgcgcggagactaaatgtgatatcgcggctgt
ttcgaccaattttgcgattatggaattgattcgaaaatgtggtttccttggaccggagaa
gcctgaagagccgccaatgaaacaagccgcccaaccacaattggagcaaacgattgacga
gctgatcgatgaaggatatcgacttttgattgctgacgtgaaagcggatctgatggcaaa
attcgagcaacttcgcgatgtatcaaaaactagtacaattgaagccacgaaggcagacct
cgaagttttgtgcgattcagtgaaagaagctgtatatgaagctgatttggaatattccta
tgatgaagaggaatcagatgaagatgaagaagagaatgaagacgaagaagatgtcgagga
ggaagaagaaaagccttgcgctgaaaagaaaagtcctgctcagccagaacgaagctcgtc
tctcgtgcgaggattccagatcggtctcagtcggcttttcagaaagcgaagaattcacac
ggagcaccttcaagtcgaccacggagcgatcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGGCGTATTTGGAGTGCCCGTCG 615 665 235 Antisense
ATATCGCGGCTGTTTCGACCAATTT 84 21 282 Antisense
GTTTCCTTGGACCGGAGAAGCCTGA 307 449 336 Antisense
AGAGCCGCCAATGAAACAAGCCGCC 636 69 361 Antisense
GCCGCCCAACCACAATTGGAGCAAA 141 283 380 Antisense
AAGCCACGAAGGCAGACCTCGAAGT 237 149 516 Antisense
AGAAAAGTCCTGCTCAGCCAGAACG 197 73 681 Antisense
CAGCCAGAACGAAGCTCGTCTCTCG 172 203 695 Antisense
GCGAGGATTCCAGATCGGTCTCAGT 244 291 721 Antisense
AATTCACACGGAGCACCTTCAAGTC 433 175 766 Antisense
TCAAGTCGACCACGGAGCGATCGCT 654 631 784 Antisense
Sequence Source Affymetrix Proprietary Database