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[173669_s_at]

Description AV195396 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K10B3.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195396 /WB_GENE_ID=K10B3.6 /WP=CE07369 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk641c8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 03      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 90      6grp_total > 25      4grp_total > 14      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 328.5
(3)
P 		209.7
(-2.2)
P 		191.4
(-3)
P 		317.7
(2.5)
P 		137
B 325.2
(-0.3)
P 		202.9
(-2.7)
P 		189.3
(-3)
P 		496.3
(3)
P 		307
C 388.4
(2.7)
P 		145.2
(-3)
P 		174.5
(-2.3)
P 		402
(3)
P 		257
avr 347.4
(1.4) 		185.9
(-3) 		185.1
(-3) 		405.3
(3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 175.9
(1.2)
P 		212.3
(3)
P 		176.2
(1.2)
P 		149
(-0.2)
P 		93.4
(-3)
P 		147.5
(-0.3)
P 		119
B 272.9
(3)
P 		210.6
(0.4)
P 		177.1
(-1)
P 		162.3
(-1.6)
P 		130.1
(-3)
P 		143.4
(-2.4)
P 		143
C 292.4
(3)
P 		189.5
(-0.3)
P 		176.9
(-0.7)
P 		104.9
(-3)
P 		117.7
(-2.6)
P 		123.4
(-2.4)
P 		188
avr 247.1
(3) 		204.1
(1.1) 		176.7
(-0.2) 		138.7
(-1.9) 		113.7
(-3) 		138.1
(-1.9) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 119.6
(3)
P 		45.5
(-3)
P 		50
(-2.6)
P 		46.5
(-2.9)
P 		74
B 103.7
(2.8)
P 		50.1
(-2.4)
P 		43.9
(-3)
P 		105.8
(3)
P 		62
C 128.6
(3)
P 		41.8
(-3)
P 		60.8
(-1.7)
P 		67.8
(-1.2)
P 		87
avr 117.3
(3) 		45.8
(-3) 		51.6
(-2.5) 		73.4
(-0.7) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 32.4
(-2.5)
P 		75.5
(3)
P 		38.4
(-1.7)
P 		37.8
(-1.8)
P 		28.2
(-3)
P 		35.9
(-2)
P 		47
B 94.9
(3)
P 		70.1
(0.1)
P 		43
(-3)
P 		43
(-3)
P 		52.8
(-1.9)
P 		53.5
(-1.8)
P 		52
C 108.4
(3)
P 		57.8
(-0.5)
P 		45
(-1.4)
P 		21.1
(-3)
P 		38.1
(-1.8)
P 		41.3
(-1.6)
P 		87
avr 78.6
(3) 		67.8
(1.5) 		42.1
(-1.9) 		34
(-3) 		39.7
(-2.2) 		43.6
(-1.7) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173669_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26199
Sequence Type Exemplar sequence
Representative Public ID AV195396 NCBI
Target Description AV195396 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K10B3.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195396 /WB_GENE_ID=K10B3.6 /WP=CE07369 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk641c8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029613 NCBI Caenorhabditis elegans K10B3.6a (K10B3.6) mRNA, complete cds. 11/11 None
SNAP00000032570 ENSEMBL cdna:SNAP chromosome:CEL140:X:3103588:3110606:-1 11/11 None
GENEFINDER00000032576 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3106625:3110606:-1 11/11 None
K10B3.6a ENSEMBL cdna:known chromosome:CEL140:X:3106544:3111332:-1 gene:K10B3.6 11/11 A 
K10B3.6b ENSEMBL cdna:known chromosome:CEL140:X:3106568:3111332:-1 gene:K10B3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180600 3 1 NM_001029613 173121_s_at (11), 173669_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3106625-3111333(-) 100.0 100.0
Public Domain and Genome References
Ensembl K10B3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53873 Hypothetical protein K10B3.6a [Caenorhabditis elegans] ref|NP_001024784.1| K10B3.6a [Caenorhabditis elegans] 0.0
blast CAE68379 Hypothetical protein CBG14135 [Caenorhabditis briggsae] 0.0
blast AAP46281 Hypothetical protein K10B3.6b [Caenorhabditis elegans] ref|NP_001024785.1| K10B3.6b [Caenorhabditis elegans] 0.0
blast AAB53872 Hypothetical protein K10B3.5 [Caenorhabditis elegans] ref|NP_508532.1| K10B3.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 1.1E-100
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 9.6E-91
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 1.1E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024784.1 1 20-37
K10B3.6a 1 20-37
K10B3.6b 1 20-37
Sequence
Target Sequence 
>C. ELEGANS:173669_S_AT
gctacgacacgttgacgagaatgtaggattgaatattgagattaaatatccaatgtatat
gcaggatgggagccatgaatgtcaggggtactttgaacaaaacaaatttgttgacattat
actagccgaagtagcagaacacgcgggaaatcgtagaatcatattttcgtgctttgagcc
ggatatttgtacaaggattacaaaaaaacaacataagtatccggtttcatttttggtggt
tggggcgacaaacagatatatgccatttcaggatatccgatcagattgtagcaagattgc
agccaatttcgctgctggatgtgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTACGACACGTTGACGAGAATGTA 44 303 1657 Antisense
GGGAGCCATGAATGTCAGGGGTACT 246 493 1724 Antisense
ATTTGTTGACATTATACTAGCCGAA 127 17 1762 Antisense
ACTAGCCGAAGTAGCAGAACACGCG 652 99 1777 Antisense
GAATCATATTTTCGTGCTTTGAGCC 618 327 1812 Antisense
GTGCTTTGAGCCGGATATTTGTACA 3 479 1825 Antisense
TATCCGGTTTCATTTTTGGTGGTTG 355 657 1874 Antisense
TTGGTGGTTGGGGCGACAAACAGAT 71 489 1889 Antisense
GATATCCGATCAGATTGTAGCAAGA 54 427 1928 Antisense
GTAGCAAGATTGCAGCCAATTTCGC 455 455 1944 Antisense
GCCAATTTCGCTGCTGGATGTGAGC 50 279 1958 Antisense
Sequence Source Affymetrix Proprietary Database