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[173668_s_at]

Description AU111004 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F52G2.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU111004 /WB_GENE_ID=F52G2.3 /WP=CE17849 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk722g4 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 43      4grp_high_8_8 > 53      6grp_total > 30      4grp_total > 59      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 207.6
(-1.6)
P 		324.4
(3)
P 		309.8
(2.4)
P 		171.1
(-3)
M 		153
B 226.5
(0.9)
P 		304.8
(3)
P 		271.6
(2.1)
P 		82.5
(-3)
A 		222
C 234.7
(0.7)
P 		233.7
(0.6)
P 		285.8
(3)
P 		153.2
(-3)
P 		133
avr 222.9
(0.4) 		287.6
(2.9) 		289.1
(3) 		135.6
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 177.5
(-0.8)
M 		314
(3)
P 		264.7
(1.6)
P 		260.6
(1.5)
P 		174.3
(-0.9)
A 		96.9
(-3)
P 		217
B 178.9
(-1.3)
P 		304.9
(3)
P 		283.9
(2.3)
P 		279.8
(2.1)
P 		174.5
(-1.5)
P 		130.3
(-3)
P 		175
C 156.5
(-2.2)
P 		301
(3)
P 		241.2
(0.8)
P 		278.2
(2.2)
P 		135.8
(-3)
P 		140.1
(-2.8)
P 		165
avr 171
(-1.4) 		306.6
(3) 		263.3
(1.6) 		272.9
(1.9) 		161.5
(-1.7) 		122.4
(-3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 75.6
(2.4)
P 		70.4
(1.9)
P 		81
(3)
P 		25.1
(-3)
M 		56
B 72.2
(2.7)
P 		75.3
(3)
P 		62.9
(1.7)
P 		17.6
(-3)
A 		58
C 77.7
(1.2)
P 		67.2
(0.4)
P 		99.6
(3)
P 		25.8
(-3)
P 		74
avr 75.2
(2.4) 		71
(2) 		81.2
(3) 		22.8
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 32.7
(-2.4)
M 		111.7
(3)
P 		57.6
(-0.7)
P 		66.1
(-0.1)
P 		52.6
(-1)
A 		23.6
(-3)
P 		88
B 62.2
(-1.5)
P 		101.5
(3)
P 		68.9
(-0.7)
P 		74.1
(-0.1)
P 		70.9
(-0.5)
P 		48.6
(-3)
P 		53
C 58
(-1.2)
P 		91.8
(3)
P 		61.4
(-0.8)
P 		56
(-1.5)
P 		44
(-3)
P 		46.9
(-2.6)
P 		48
avr 51
(-1.9) 		101.7
(3) 		62.6
(-0.8) 		65.4
(-0.5) 		55.8
(-1.4) 		39.7
(-3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173668_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24537
Sequence Type Exemplar sequence
Representative Public ID AU111004 NCBI
Target Description AU111004 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F52G2.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU111004 /WB_GENE_ID=F52G2.3 /WP=CE17849 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk722g4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070210 NCBI Caenorhabditis elegans F52G2.3 (F52G2.3) mRNA, complete cds. 11/11 None
SNAP00000029682 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13543417:13548191:-1 11/11 None
GENEFINDER00000029685 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13543417:13548191:-1 11/11 None
F52G2.3 ENSEMBL cdna:known chromosome:CEL140:IV:13543417:13548199:-1 gene:F52G2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13543423-13548198(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52G2.3
Entrez Gene 178324 Entrez gene
SwissProt O62256 EMBL-EBI
WormBase CE35553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05205 Hypothetical protein F52G2.3 [Caenorhabditis elegans] ref|NP_502611.2| F52G2.3 [Caenorhabditis elegans] 0.0
blast CAE67620 Hypothetical protein CBG13172 [Caenorhabditis briggsae] 2.0E-28
blast CAB05207 Hypothetical protein F52G2.2 [Caenorhabditis elegans] ref|NP_502610.1| RNAi Spreading Defective (see also sid) family member (rsd-2) [Caenorhabditis elegans] 4.0E-28
Sequence
Target Sequence 
>C. ELEGANS:173668_S_AT
gcctattccagttcaagcaactactcattgggcaccatttgagattacggcaataaataa
tgttaacaatgaaaaaaatgaggtgaaaaccgttggaaaagaatgtttcgcattgttcaa
agtcgatctttctcggcctgaaggaaagtttagtaaatggacaacgatcggaggaaatcc
gattttcagctgcgaaattgttggttatgttatgttggcacataggttaggagacactgc
tgataatgtgaaaagacacaatgacgatattgagatgcaaaagaaacgtgctcaacaaga
acattttgctcagcaacaacgaccagcaggcagttcaaatagttatcaaacagaaaatgc
acaacaacacagcatgtcaaacaacatgcaatattatcactcgcaggcgcctccagtatc
ttccagatcttcaattagtttgggtgaaactgctgaattcaaaaataaattggaacgaac
caatgatatgatggaatctctgtgcgatgcgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTATTCCAGTTCAAGCAACTACT 671 277 1093 Antisense
AAGCAACTACTCATTGGGCACCATT 518 149 1107 Antisense
GGGCACCATTTGAGATTACGGCAAT 229 491 1122 Antisense
GTTTCGCATTGTTCAAAGTCGATCT 462 451 1197 Antisense
TCGATCTTTCTCGGCCTGAAGGAAA 621 603 1215 Antisense
AGGAAATCCGATTTTCAGCTGCGAA 423 55 1264 Antisense
GCTCAACAAGAACATTTTGCTCAGC 28 303 1382 Antisense
GCAACAACGACCAGCAGGCAGTTCA 294 319 1405 Antisense
TGCAATATTATCACTCGCAGGCGCC 239 577 1479 Antisense
CTCCAGTATCTTCCAGATCTTCAAT 15 237 1503 Antisense
GATGGAATCTCTGTGCGATGCGATT 53 407 1582 Antisense
Sequence Source Affymetrix Proprietary Database