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[173667_at]

Description AV196055 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0416.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196055 /WB_GENE_ID=B0416.5 /WP=CE02435 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk649c8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 20      6grp_total > 38      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 559
1 2 3 4 range
A 1434.7
(0.3)
P 		1614.4
(3)
P 		1514.8
(1.5)
P 		1215.4
(-3)
P 		399
B 1774.1
(3)
P 		1310
(-2.8)
P 		1291.5
(-3)
P 		1543.8
(0.1)
P 		483
C 1451.3
(1.9)
P 		1269.8
(-3)
P 		1466.6
(2.3)
P 		1492.1
(3)
P 		222
avr 1553.4
(3) 		1398.1
(-3) 		1424.3
(-2) 		1417.1
(-2.3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 779
1 2 3 4 5 6 range
A 1422.5
(3)
P 		998.1
(-0.3)
P 		829.6
(-1.7)
P 		658.1
(-3)
P 		885.8
(-1.2)
P 		883.8
(-1.2)
P 		764
B 1436.6
(3)
P 		1218.2
(1.2)
P 		701.2
(-3)
P 		879.2
(-1.5)
P 		819.8
(-2)
P 		1165.2
(0.8)
P 		735
C 1279.7
(3)
P 		1087.2
(0.6)
P 		799.9
(-3)
P 		864.2
(-2.2)
P 		1008.9
(-0.4)
P 		1202.3
(2)
P 		480
avr 1379.6
(3) 		1101.2
(0.2) 		776.9
(-3) 		800.5
(-2.8) 		904.8
(-1.7) 		1083.8
(0.1) 		603
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 522.4
(3)
P 		350.4
(0)
P 		396
(0.8)
P 		177.9
(-3)
P 		345
B 565.7
(3)
P 		323.5
(-2.5)
P 		299.3
(-3)
P 		329
(-2.3)
P 		266
C 480.4
(2.3)
P 		365.1
(-0.4)
P 		511.2
(3)
P 		251.6
(-3)
P 		260
avr 522.8
(3) 		346.3
(-0.9) 		402.2
(0.3) 		252.8
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 262.2
(0)
P 		355
(3)
P 		180.7
(-2.6)
P 		166.9
(-3)
P 		267.3
(0.2)
P 		215.2
(-1.5)
P 		188
B 499.9
(3)
P 		405.5
(1.3)
P 		170.3
(-3)
P 		232.9
(-1.9)
P 		333.1
(-0)
P 		434.5
(1.8)
P 		330
C 474.3
(3)
P 		331.7
(0.2)
P 		203.6
(-2.4)
P 		173.8
(-3)
P 		326.5
(0)
P 		402.5
(1.6)
P 		301
avr 412.1
(3) 		364.1
(1.7) 		184.9
(-3) 		191.2
(-2.8) 		309
(0.3) 		350.7
(1.4) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25847
Sequence Type Exemplar sequence
Representative Public ID AV196055 NCBI
Target Description AV196055 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0416.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196055 /WB_GENE_ID=B0416.5 /WP=CE02435 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk649c8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077161(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077161 NCBI Caenorhabditis elegans B0416.5a (B0416.5) mRNA, complete cds. 9/11 None
B0416.5a.5 ENSEMBL cdna:known chromosome:CEL140:X:9268511:9270783:-1 gene:B0416.5 9/11 None
B0416.5a.2 ENSEMBL cdna:known chromosome:CEL140:X:9268564:9270785:-1 gene:B0416.5 11/11 A 
B0416.5a.1 ENSEMBL cdna:known chromosome:CEL140:X:9268564:9270783:-1 gene:B0416.5 11/11 A 
B0416.5a.3 ENSEMBL cdna:known chromosome:CEL140:X:9268568:9271086:-1 gene:B0416.5 11/11 A B 
B0416.5a.4 ENSEMBL cdna:known chromosome:CEL140:X:9268568:9271086:-1 gene:B0416.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181158 2 1 NM_077161 173667_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9268606-9270767(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0416.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG38882 Hypothetical protein B0416.5a [Caenorhabditis elegans] ref|NP_509562.1| B0416.5a [Caenorhabditis elegans] sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromosome X 0.0
blast CAE69845 Hypothetical protein CBG16171 [Caenorhabditis briggsae] 0.0
blast AAL11101 Hypothetical protein B0416.5b [Caenorhabditis elegans] ref|NP_509563.1| B0416.5b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509562.1 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5a.5 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5a.2 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5a.1 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5a.3 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
B0416.5a.4 12 46-65,80-102,107-129,139-161,182-201,207-229,262-284,299-318,331-348,353-375,387-409,444-466
Sequence
Target Sequence 
>C. ELEGANS:173667_AT
tgttttaaccaaaataccactctcttaatattgatcacttgtacaataaccttattttgc
aagcatttttacaaacgcccaaccaaccaggatttcctttccaaaaaagtggaaccaaat
gtcctccagctttctaattttccagtaatatcctcaaactccaacaattcccccttaatt
taatgtactgttatgttgttgcaagcctctcgttctatttctctctacaatttattattg
agcattttttgcattctagtgcttggttgtgttgtacgattatctcaggcagccaaaagt
catcaaggactatatttgataagatttgtaccgcacacgttggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTAACCAAAATACCACTCTCT 8 559 1558 Antisense
ACCACTCTCTTAATATTGATCACTT 526 85 1573 Antisense
AATAACCTTATTTTGCAAGCATTTT 536 171 1602 Antisense
GCAAGCATTTTTACAAACGCCCAAC 468 321 1616 Antisense
TTGAGCATTTTTTGCATTCTAGTGC 611 705 1795 Antisense
TTTGCATTCTAGTGCTTGGTTGTGT 493 667 1805 Antisense
GCTTGGTTGTGTTGTACGATTATCT 184 307 1818 Antisense
GTACGATTATCTCAGGCAGCCAAAA 310 457 1831 Antisense
CAGGCAGCCAAAAGTCATCAAGGAC 91 209 1843 Antisense
TATTTGATAAGATTTGTACCGCACA 83 661 1870 Antisense
AAGATTTGTACCGCACACGTTGGTC 108 155 1878 Antisense
Sequence Source Affymetrix Proprietary Database