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[173666_at]

Description AU109854 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R07G3.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109854 /WB_GENE_ID=R07G3.8 /WP=CE02027 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711h4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 76      6grp_total > 46      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1118
1 2 3 4 range
A 941.5
(-0.7)
P 		954
(-0.6)
P 		612.9
(-3)
P 		1477.2
(3)
P 		864
B 1070.3
(-0.5)
P 		1027.9
(-0.8)
P 		611.9
(-3)
P 		1729.7
(3)
P 		1118
C 889.4
(-2.5)
P 		1111.1
(-1)
P 		824.9
(-3)
P 		1669.4
(3)
P 		845
avr 967.1
(-1.2) 		1031
(-0.8) 		683.2
(-3) 		1625.4
(3) 		942

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 1135.3
(3)
P 		1079.1
(1.9)
P 		1067.9
(1.6)
P 		1058.4
(1.5)
P 		837
(-3)
P 		1014.7
(0.6)
P 		298
B 1205.2
(1.8)
P 		1304.8
(3)
P 		926.2
(-1.4)
P 		1229.7
(2.1)
P 		787.5
(-3)
P 		1225.1
(2.1)
P 		517
C 998.6
(0.3)
P 		1223.2
(3)
P 		1041.7
(0.8)
P 		1152.3
(2.1)
P 		731.2
(-3)
P 		1065.9
(1.1)
P 		492
avr 1113
(1.7) 		1202.4
(3) 		1011.9
(0.3) 		1146.8
(2.2) 		785.2
(-3) 		1101.9
(1.6) 		417
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 342.8
(3)
P 		207.1
(-1.5)
P 		160.2
(-3)
P 		216.2
(-1.2)
P 		183
B 341.3
(2.3)
P 		253.9
(-0)
P 		141.8
(-3)
P 		368.6
(3)
P 		227
C 294.4
(-1)
P 		319.4
(3)
P 		287.5
(-2.1)
P 		281.5
(-3)
P 		38
avr 326.2
(3) 		260.1
(-0.1) 		196.5
(-3) 		288.8
(1.3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 209.3
(-3)
P 		383.8
(3)
P 		232.6
(-2.2)
P 		268.4
(-1)
P 		252.6
(-1.5)
P 		247
(-1.7)
P 		175
B 419.4
(2)
P 		434.3
(2.4)
P 		224.9
(-3)
P 		325.7
(-0.4)
P 		320
(-0.5)
P 		456.8
(3)
P 		232
C 370.1
(2.9)
P 		373.2
(3)
P 		265.1
(-1.6)
P 		231.7
(-3)
P 		236.6
(-2.8)
P 		356.8
(2.3)
P 		142
avr 332.9
(0.5) 		397.1
(3) 		240.9
(-3) 		275.3
(-1.7) 		269.7
(-1.9) 		353.5
(1.3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173666_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23549
Sequence Type Exemplar sequence
Representative Public ID AU109854 NCBI
Target Description AU109854 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R07G3.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109854 /WB_GENE_ID=R07G3.8 /WP=CE02027 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711h4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063198 NCBI Caenorhabditis elegans R07G3.8 (R07G3.8) mRNA, complete cds. 11/11 None
R07G3.8 ENSEMBL cdna:known chromosome:CEL140:II:7618221:7620436:-1 gene:R07G3.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7618228-7620433(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07G3.8
Entrez Gene 174234 Entrez gene
SwissProt Q09387 EMBL-EBI
WormBase CE02027 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600233_AT similar to CG32066-PB, isoform B cfa
CANINE:1591874_AT similar to CG32066-PB, isoform B cfa
CANINE_2:CFA.9526.1.A1_S_AT similar to CG32066-PB, isoform B cfa
CANINE_2:CFA.9526.2.A1_AT similar to CG32066-PB, isoform B cfa
CHICKEN:GGAAFFX.13083.1.S1_S_AT similar to hypothetical protein DKFZp566A1524 gga
HG-U133_PLUS_2:208092_S_AT family with sequence similarity 49, member A hs
HG-U133A:208092_S_AT family with sequence similarity 49, member A hs
HG-U133A_2:208092_S_AT family with sequence similarity 49, member A hs
HU35KSUBA:RC_AA350817_AT family with sequence similarity 49, member A hs
U133_X3P:G13540579_3P_S_AT family with sequence similarity 49, member A hs
HG-U95AV2:35143_AT family with sequence similarity 49, member A hs
HG-U133_PLUS_2:209683_AT Family with sequence similarity 49, member A hs
HG-U133A_2:209683_AT Family with sequence similarity 49, member A hs
HG-U133A:209683_AT Family with sequence similarity 49, member A hs
HG-U133_PLUS_2:230276_AT Family with sequence similarity 49, member A hs
HG-U133B:230276_AT Family with sequence similarity 49, member A hs
HU35KSUBA:RC_AA243139_AT Family with sequence similarity 49, member A hs
HU35KSUBC:RC_D51291_AT Family with sequence similarity 49, member A hs
U133_X3P:HS.4863.0.S2_3P_AT Family with sequence similarity 49, member A hs
U133_X3P:HS.125780.0.A1_3P_X_AT Family with sequence similarity 49, member A hs
U133_X3P:HS.125780.0.A1_3P_S_AT Family with sequence similarity 49, member A hs
U133_X3P:HS.125780.0.A1_3P_AT Family with sequence similarity 49, member A hs
HG-U95B:52183_AT Family with sequence similarity 49, member A hs
HG-U95C:64419_AT Family with sequence similarity 49, member A hs
HG-U95E:73933_AT Family with sequence similarity 49, member A hs
MOUSE430_2:1432124_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOE430B:1432124_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MG-U74BV2:111518_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MG-U74CV2:168655_R_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOE430B:1431045_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOUSE430_2:1431045_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOE430B:1454806_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOUSE430_2:1454806_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MU19KSUBC:TC40488_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
RAE230B:1394470_AT similar to hypothetical protein DKFZp566A1524 (predicted) rn
RAT230_2:1394470_AT similar to hypothetical protein DKFZp566A1524 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK31548 Hypothetical protein R07G3.8 [Caenorhabditis elegans] ref|NP_495599.1| R07G3.8 [Caenorhabditis elegans] 0.0
blast CAE67504 Hypothetical protein CBG13014 [Caenorhabditis briggsae] 1.0E-180
blast NP_001016838 hypothetical protein LOC549592 [Xenopus tropicalis] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR009828 EMBL-EBI Protein of unknown function DUF1394 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173666_AT
taatttcattttttgtcaatttgttcattaattctagtcatccttgcctctattttatgt
tctcttatcgtttctagttgaagcccatttcctcatacacggtgattatgttcctctcct
cgtcaaacagtactttttgtcagtgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTTCATTTTTTGTCAATTTGTT 401 635 1016 Antisense
CATTAATTCTAGTCATCCTTGCCTC 205 215 1041 Antisense
TCATCCTTGCCTCTATTTTATGTTC 694 619 1053 Antisense
GCCTCTATTTTATGTTCTCTTATCG 116 283 1061 Antisense
TATGTTCTCTTATCGTTTCTAGTTG 702 653 1071 Antisense
GTTTCTAGTTGAAGCCCATTTCCTC 681 449 1085 Antisense
TAGTTGAAGCCCATTTCCTCATACA 458 651 1090 Antisense
CCCATTTCCTCATACACGGTGATTA 369 257 1099 Antisense
ATACACGGTGATTATGTTCCTCTCC 258 25 1110 Antisense
CTCCTCGTCAAACAGTACTTTTTGT 93 115 1131 Antisense
AAACAGTACTTTTTGTCAGTGATAA 164 129 1140 Antisense
Sequence Source Affymetrix Proprietary Database