[Home] | [Total List]

[173664_at]

Description CEK070D5F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC13.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D69480 /WB_GENE_ID=ZC13.4 /WP=CE14990 /CHR=X /FEA=Genomic Cluster /GEN=mab-7 /DEF=C.elegans cDNA clone yk70d5 : 5prime end, single read.
Cluster 6grp_total > 83      4grp_total > 48      6grp_cgc > 98      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 1.5
(-3)
A 		121.5
(0.1)
P 		237.5
(3)
P 		37.5
(-2.1)
A 		236
B 10
(-3)
A 		159.9
(0.5)
P 		270.5
(3)
P 		49.8
(-2.1)
P 		261
C 3.8
(-3)
A 		212.4
(1.6)
P 		275.8
(3)
P 		87.4
(-1.2)
P 		272
avr 5.1
(-3) 		164.6
(0.7) 		261.3
(3) 		58.2
(-1.8) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 53.9
(-3)
A 		125.6
(-0.9)
P 		112.7
(-1.3)
P 		157.8
(0)
P 		259.6
(3)
P 		96.1
(-1.8)
P 		206
B 21
(-3)
A 		98.7
(-1.1)
P 		101.1
(-1)
P 		135.9
(-0.2)
P 		265.8
(3)
P 		71.5
(-1.8)
P 		245
C 30.4
(-3)
A 		118.7
(-0.6)
P 		51.7
(-2.4)
P 		124.7
(-0.4)
P 		246.9
(3)
P 		96.9
(-1.2)
P 		217
avr 35.1
(-3) 		114.3
(-0.9) 		88.5
(-1.6) 		139.5
(-0.2) 		257.4
(3) 		88.2
(-1.6) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 0.5
(-3)
A 		26.4
(-0.5)
P 		62.1
(3)
P 		5.5
(-2.5)
A 		62
B 3.2
(-3)
A 		39.5
(0.7)
P 		62.7
(3)
P 		10.6
(-2.3)
P 		60
C 1.2
(-3)
A 		61.1
(0.8)
P 		96.1
(3)
P 		14.7
(-2.1)
P 		95
avr 1.6
(-3) 		42.3
(0.4) 		73.6
(3) 		10.3
(-2.3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 9.9
(-3)
A 		44.7
(0.1)
P 		24.5
(-1.7)
P 		40
(-0.4)
P 		78.3
(3)
P 		23.4
(-1.8)
P 		68
B 7.3
(-3)
A 		32.9
(-1.5)
P 		24.6
(-2)
P 		36
(-1.3)
P 		108
(3)
P 		26.7
(-1.8)
P 		101
C 11.3
(-3)
A 		36.2
(-0.8)
P 		13.2
(-2.8)
P 		25.1
(-1.8)
P 		79.9
(3)
P 		32.5
(-1.1)
P 		69
avr 9.5
(-3) 		37.9
(-0.8) 		20.8
(-2.1) 		33.7
(-1.2) 		88.7
(3) 		27.5
(-1.6) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26158
Sequence Type Exemplar sequence
Representative Public ID CEK070D5F NCBI
Target Description CEK070D5F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC13.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D69480 /WB_GENE_ID=ZC13.4 /WP=CE14990 /CHR=X /FEA=Genomic Cluster /GEN=mab-7 /DEF=C.elegans cDNA clone yk70d5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075773(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075773 NCBI Caenorhabditis elegans Male ABnormal family member (mab-7) (mab-7) mRNA, complete cds. 11/11 None
ZC13.4 ENSEMBL cdna:known chromosome:CEL140:X:892240:896714:-1 gene:ZC13.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:892250-896715(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mab-7
Ensembl ZC13.4
Entrez Gene 180440 Entrez gene
SwissProt Q95Q39 EMBL-EBI
WormBase CE14990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL13330 Male abnormal protein 7 [Caenorhabditis elegans] ref|NP_508174.1| Male ABnormal family member (mab-7) [Caenorhabditis elegans] 1.0E-160
blast AAW59416 MAB-7 [Caenorhabditis elegans] 1.0E-151
blast CAE63604 Hypothetical protein CBG08095 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 1.5E-7
Sequence
Target Sequence 
>C. ELEGANS:173664_AT
taataattaccattttgtcatttttcatttgtatttattttccatcaactttcattctaa
tagaatgctcagctagtgaaatttcaaaatactgtatttttctattacttttgcaactct
tatctgtcagttaacaacttttgttagaaccaaaggcattttgctccaactatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATAATTACCATTTTGTCATTTTT 444 633 881 Antisense
GTATTTATTTTCCATCAACTTTCAT 560 453 911 Antisense
TTTTCCATCAACTTTCATTCTAATA 412 677 918 Antisense
ATTCTAATAGAATGCTCAGCTAGTG 184 11 934 Antisense
TAGAATGCTCAGCTAGTGAAATTTC 125 633 941 Antisense
TATTTTTCTATTACTTTTGCAACTC 310 663 975 Antisense
TACTTTTGCAACTCTTATCTGTCAG 383 645 986 Antisense
GCAACTCTTATCTGTCAGTTAACAA 328 319 993 Antisense
TATCTGTCAGTTAACAACTTTTGTT 320 659 1001 Antisense
GAACCAAAGGCATTTTGCTCCAACT 150 345 1027 Antisense
AAAGGCATTTTGCTCCAACTATATT 341 119 1032 Antisense
Sequence Source Affymetrix Proprietary Database